| GMM | Greedy Modularity Maximization |
| IM | InfoMap |
| LE | Leading Eigenvector |
| Lo | Louvain |
| LP | Label Propagation |
| PDB | Protein Data Bank |
| CASP | Critical Assessment of protein Structure Prediction |
| lRMSD | least root-mean-squared-deviation |
| ML | Machine Learning |
| PC | Pareto Count |
| PR | Pareto Rank |
| SVM | Support Vector Machines |
| WT | Walktrap |
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