Table 1.
Summary of quality preprocessing of RNA sequencing data.
| Sample a | Raw reads (M) | Raw Bases (G) | Clean Reads (M) | Valid Bases (%) | Q30 (%) b | GC (%) |
|---|---|---|---|---|---|---|
| L7-24 h | 53.26 | 7.99 | 51.65 | 92.65 | 95.17 | 48.44 |
| L7-3 h | 51.1 | 7.67 | 49.57 | 91.96 | 94.22 | 48.76 |
| L7-CK | 52.94 | 7.94 | 50.72 | 90.81 | 93.01 | 48.15 |
| L7-Re24 | 52.33 | 7.85 | 50.2 | 89.7 | 94.3 | 48.35 |
| Lenox-24 h | 52.74 | 7.91 | 51.16 | 92.65 | 94.95 | 48.36 |
| Lenox-3 h | 51.25 | 7.69 | 49.53 | 91.45 | 93.01 | 48.92 |
| Lenox-CK | 49.26 | 7.39 | 47.75 | 91.14 | 93.96 | 48.25 |
| Lenox-Re24 h | 53.18 | 7.98 | 51.61 | 91.61 | 95.22 | 48.17 |
a: the growth points of Longyou-7 and Lenox subjected to 22 °C (as control, CK) and 4 °C for 3 h, 24 h, and recovery at 22 °C for 24 h (as treatments, TR), three replicates per sample. b: the percentage of bases with a Phred value greater than 30 in the raw bases as a percentage of the total base.