Table 2.
Performance of single protein phylogenies.
| Number of non-consensual nodes | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| 0 |
1 |
2 |
3 |
4 |
|||||
| Protein | AA | Protein | AA | Protein | AA | Protein | AA | Protein | AA |
| aco1(1) | 882 | accA(3) | 2183 | alxA (2) | 699 | 5NT(3) | 516 | aclY(2) | 610 |
| agl (1) | 1474 | amdA (1) | 678 | cinC (2) | 837 | acsa (2) | 653 | clcD (2) | 825 |
| 270990(1) | 601 | glnA3(1) | 732 | 287723(2) | 912 | argC (2) | 740 | grpA | 211 |
| 271904(1) | 604 | midA(1) | 422 | 290197(2) | 496 | cas1 (2) | 699 | scdA(3) | 666 |
| 289993(1) | 613 | pdhC(1) | 497 | glpD(2) | 878 | dcsA (3) | 975 | ||
| rpa2(2) | 1130 | purD(1) | 787 | glud2(3) | 1004 | 276321(2) | 506 | ||
| rpc3(2) | 567 | purL(1) | 1325 | hdaB(2) | 391 | dnmA (3) | 314 | ||
| pyr13(1) | 2144 | ogdH(3) | 975 | fcsA(2) | 646 | ||||
| rpa1(0) | 1460 | pfkA(2) | 765 | gcsa(3) | 602 | ||||
| rpb1(2) | 1541 | pgmB(4) | 577 | glpV(2) | 852 | ||||
| rpc1(2) | 1372 | sglA(3) | 526 | sdhA(3) | 611 | ||||
| smdA(0) | 402 | ||||||||
| tkt2(4) | 661 | ||||||||
| xdH(3) | 1318 | ||||||||
Summary of the number of non-consensual nodes detected in 21-species phylogenies inferred from the individual proteins of the 47 protein phylogeny (see Appendix A, Fig. A5). Data in parentheses are the number of non-consensual nodes detected in the earlier 14-species phylogenies of the same proteins (Singh et al., 2016). The proteins used in the AAPPRS phylogeny are underlined. The DDB_G0 prefixes of genes with 12 character gene names are not shown.