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. 2019 Mar 22;2:109. doi: 10.1038/s42003-019-0352-3

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — The supervised clustering of T-cell genes in HPV-positive and virus-negative HNSC tumors. In the upper panel, we show the expression of T-ell markers such CD4, CD8 and immune checkpoint genes PD-L1, PD-L2, PD-1, CD80, CD86, CTLA-4, Tim-3, LAG-3, and 4-1BB. Tumors are clustered to four different groups based on the T-cell and virus statuses, i.e., Virus-/T-cell_low, HPV+/T-cell_low, Virus-/T-cell_high, and HPV+/T-cell_high from left to right