Table 3.
List of Marker-trait associations (MTAs) fulfill the Bonferroni correction, with desirable allele and desirable allele effect. Desirable genotypes with desirable SNP alleles and phenotype may be used in foxtail breeding.
| Trait | SNP | Chr. | Position | SNP alleles | Desirable allele | Desirable Allele effect | P-value | Desirable genotype |
|---|---|---|---|---|---|---|---|---|
| FLW | C9.37225457 | 9 | 37225457 | C/T | T | 0.9** | 5.06E-18 | F8, F34 (3.2 cm) |
| C9.37443288 | 9 | 37443288 | C/A | A | 0.6** | 3.12E-17 | ||
| C9.38068016 | 9 | 38068016 | C/T | T | 0.6** | 3.12E-17 | ||
| GY | C3.50114070 | 3 | 50114070 | A/G | G | 12.7** | 1.77E-07 | F14 (42.3 g) |
| C7.19705515 | 7 | 19705515 | A/C | C | 11.5** | 7.82E-07 | ||
| TGW | C9.37011889 | 9 | 37011889 | A/G | A | 0.1** | 4.98E-09 | D85, D76 (3.8 g) |
| C6.34654923 | 6 | 34654923 | T/C | T | 0.1** | 9.52E-08 |
**0.01 level of significance in Kruskal–Wallis test.