|
Mean value of physical quantity X
|
|
, ,
|
Values of physical quantity X in the cis (I), pore (II) and trans (III) regions |
| A |
Asphericity |
|
α, δ
|
Exponents for the scaling behavior of
|
|
Retardation |
|
Salt concentration |
|
Direct distance from the n-th monomer to the pore |
|
Diffusion coefficient |
| E |
Strength of electric field (applied only inside the pore) |
| e |
Charge unit |
| (, ), (, ) |
Energy and length parameters of WCA potential for bead-bead (bb) and bead-wall (bw) interactions |
|
tensile force on the n-th bond |
| I |
Ionic strength |
|
Gyration tensor |
| κ |
Inverse Debye length |
| k |
Spring constant of bond |
|
Boltzmann constant |
|
Equilibrium bond length |
|
Charge distance on the chain backbone |
|
Length of the n-th bond |
|
, ,
|
Persistence length, intrinsic and electrostatic persistence lengths |
| η |
Shape factor () |
|
Contour distance from the n-th monomer to the pore |
|
Bjerrum length |
|
, ,
|
Eigenvalues of the gyration tensor
|
|
Mean of the eigenvalues () |
| m |
Mass unit of simulation |
| N |
Number of monomers of a chain |
|
,
|
Number of condensed -ions, number of condensed -ions |
|
Number of monomers in a region |
|
n,
|
Monomer ID number, scaled n () |
| ϕ |
Azimuthal angle |
| P |
Prolateness |
|
Probability density distribution |
|
Square of the end-to-end distance |
|
Square of the radius of gyration |
| σ |
Length unit of simulation |
|
,
|
Fitting parameters for Equation (19) |
|
s,
|
Translocation coordinate, scaled s () |
|
,
|
Hump position of the function, scaled () |
| θ |
Polar angle |
| T |
Temperature |
|
t,
|
Time, scaled time () |
|
,
|
Time needed to reach the translocation coordinate s,
|
| τ |
Translocation time |
|
Time unit of simulation |
|
,
|
Drift velocity, estimated drift velocity |
|
Mean threading velocity () |
|
,
|
Full width at half maximum of a log-normal distribution,
|
|
,
|
Waiting time function, normalized waiting time function |
| ξ |
Exponent for the scaling behavior of
|
| ζ |
Friction coefficient |