Table 2. Top 10 GO_BP terms in each datasets ordered by FDR.

Count: number of genes enriched in the corresponding pathway; FDR, false discovery rate.

GO ID	Biological process	Count	FDR
GSE6764-HCV
GO:0030198	Extracellular matrix organization	59/196	8.35E−17
GO:0060337	Type I interferon signaling pathway	33/64	3.82E−16
GO:0006955	Immune response	88/421	7.84E−15
GO:0051607	Defense response to virus	47/165	9.18E−12
GO:0060333	Interferon-gamma-mediated signaling pathway	30/71	1.73E−11
GO:0007155	Cell adhesion	79/459	2.87E−08
GO:0007165	Signal transduction	144/1,161	9.27E−06
GO:0050900	Leukocyte migration	31/122	1.34E−05
GO:0045071	Negative regulation of viral genome replication	17/40	2.56E−05
GO:0042493	Response to drug	53/304	5.86E−05
GSE49541-NAFLD
GO:0030198	Extracellular matrix organization	29/196	6.55E−18
GO:0007155	Cell adhesion	37/459	7.26E−15
GO:0030574	Collagen catabolic process	13/64	6.27E−08
GO:0030199	Collagen fibril organization	9/39	5.87E−05
GSE84044-HBV
GO:0006955	Immune response	87/421	2.1693E−16
GO:0007155	Cell adhesion	81/459	7.1809E−11
GO:0030198	Extracellular matrix organization	46/196	2.2322E−09
GO:0070374	Positive regulation of ERK1 and ERK2 cascade	38/175	2.6745E−06
GO:0070098	Chemokine-mediated signaling pathway	23/71	3.4269E−06
GO:0002250	Adaptive immune response	33/148	1.927E−05
GO:0060326	Cell chemotaxis	21/65	2.1359E−05
GO:0006954	Inflammatory response	58/379	9.3052E−05
GO:0002548	Monocyte chemotaxis	16/42	0.00015641
GO:0030574	Collagen catabolic process	19/64	0.00052759