Table 3. Top 10 KEGG pathways in each dataset ordered by FDR.
| KEGG ID | Pathway | Count | FDR |
|---|---|---|---|
| GSE6764-HCV | |||
| hsa04514 | Cell adhesion molecules (CAMs) | 44/142 | 2.43E−10 |
| hsa05332 | Graft-versus-host disease | 18/33 | 4.53E−07 |
| hsa05330 | Allograft rejection | 18/37 | 4.39E−06 |
| hsa04940 | Type I diabetes mellitus | 19/42 | 6.01E−06 |
| hsa05416 | Viral myocarditis | 22/57 | 8.34E−06 |
| hsa04510 | Focal adhesion | 46/206 | 1.08E−05 |
| hsa04512 | ECM-receptor interaction | 27/87 | 2.20E−05 |
| hsa04612 | Antigen processing and presentation | 25/76 | 2.37E−05 |
| hsa05164 | Influenza A | 39/174 | 1.64E−04 |
| hsa05168 | Herpes simplex infection | 40/183 | 2.22E−04 |
| GSE49541-NAFLD | |||
| hsa04512 | ECM-receptor interaction | 17/87 | 3.17E−10 |
| hsa04510 | Focal adhesion | 21/206 | 6.22E−08 |
| hsa04974 | Protein digestion and absorption | 13/88 | 1.32E−05 |
| hsa04151 | PI3K-Akt signaling pathway | 22/345 | 9.83E−05 |
| hsa05146 | Amoebiasis | 11/106 | 0.007509 |
| GSE84044-HBV | |||
| hsa04512 | ECM-receptor interaction | 28/87 | 7.34E−07 |
| hsa05323 | Rheumatoid arthritis | 27/88 | 5.01E−06 |
| hsa04110 | Cell cyclea | 32/124 | 1.4E−05 |
| hsa04672 | Intestinal immune network for IgA production | 18/47 | 9.61E−05 |
| hsa05150 | Staphylococcus aureus infection | 19/54 | 0.000169 |
| hsa05222 | Small cell lung cancer | 23/85 | 0.001041 |
| hsa04151 | PI3K-Akt signaling pathway | 56/345 | 0.001159 |
| hsa04510 | Focal adhesion | 39/206 | 0.00179 |
| hsa05166 | HTLV-I infection | 45/256 | 0.00197 |
| hsa04974 | Protein digestion and absorption | 23/88 | 0.001973 |
Notes.
a
Pathway is unique in the corresponding dataset.