Table 3.
Summary of quantitative trait loci for stripe rust resistance identified at the adult plant stage among 93 northern Chinese wheat landraces
| QTL Name | Trait | Env.a | Marker | Position (cM)b | −log10(P) | R2 | Reported QTL/genesc | Intervald | Reference |
|---|---|---|---|---|---|---|---|---|---|
| QYr.sicau-1B | DS | 2016C | 1,254,926 | 74.85 | 3 | 0.15 | Qyr.wpg-1B.2 | IWA63-IWA2707 | Naruoka et al. [44] |
| QYr.cau-1BS | Xgwm264-Xwmc230 | Quan et al. [45] | |||||||
| QYr.sicau-2D | DS | 2017 M | 1,112,673 | 84.89 | 3.22 | 0.18 | QYr.caas-2DL | Xcfd44-wPt-6752 | Ren et al. [46] |
| QPst.jic-2D | Xgwm539-Xgwm349 | Melichar et al. [47] | |||||||
| QYr.sicau-3A | IT | 2016 M | 1,131,042 | 34.17 | 3.26 | 0.18 | wPt-6422-wPt-7890 | Rosewarne et al. [48] | |
| QYr.sicau-3B.1 | IT | 2016 M | 7,491,774 | – | 3.62 | 0.2 | – | – | – |
| QYr.sicau-3B.2 | IT | 2016 M | 3,027,061 | 9.02 | 4.13 | 0.24 | – | – | – |
| QYr.sicau-3B.3 | DS | 2017 M | 1,201,570 | 52.89 | 3.2 | 0.18 | – | – | – |
| QYr.sicau-4A.1 | DS&IT | 2016 M | 990,726 | 47.09 | 3.28 | 0.15 | New | ||
| 2016 M | 990,726 | 47.09 | 3.14 | 0.14 | |||||
| QYr.sicau-4A.2 | IT | 2016 M | 3,026,448 | 119.65 | 4.33 | 0.25 | QYrst.orr-4AL | wPt-7924-rPt-7987 | Dolores et al. [49] |
| QYr.sicau-4A.3 | IT | 2016C | 4,406,922 | 132.76 | 3.6 | 0.2 | QYrst.orr-4AL | wPt-9901-wPt-0032 | Dolores et al. [49] |
| IT | 2016 M | 4,406,922 | 132.76 | 5.75 | 0.34 | QYrid.ui-4A | wPt-6603-wPt-2151 | Chen et al. [50] | |
| QYr.sgi-4A.1 | wPt-4620-Xwmc219 | Prins et al. [51] | |||||||
| QYr.sicau-5A | IT | 2016C | Xwmc410–3 | – | 3.02 | 0.13 | QYr.caas-5AL | Xwmc410-Xbarc261 | Lan et al. [52] |
| QYr.sicau-5B.1 | DS | 2017C | Xbarc172–7 | – | 3.32 | 0.16 | – | – | – |
| QYr.sicau-5B.2 | DS | 2017 M | 6,026,919 | – | 3.09 | 0.17 | – | – | – |
| QYr.sicau-5B.3 | DS | 2017 M | 3,533,933 | 58.79 | 3.3 | 0.18 | QYrdr.wgp-5BL.1 | iwa2365-iwa2093 | Hou et al. [53] |
| QYrdr.wgp-5BL.2 | iwa3025-iwa5803 | Hou et al. [53] | |||||||
| QYr.sun-5B | wPt-3661-wPt-1733 | Bariana et al. [55] | |||||||
| QYrco.wpg-5B | iwa5488-wPt-6135 | Case et al. [54] | |||||||
| QYr.sicau-5B.4 | DS | 2017 M | 3,385,066 | – | 3.26 | 0.18 | – | – | – |
| QYr.sicau-5B.5 | DS | 2017 M | 1,270,827 | 131.85 | 3.19 | 0.18 | QYrdr.wgp-5BL.1 | iwa2365-iwa2093 | Hou et al. [53] |
| QYrdr.wgp-5BL.2 | iwa3025-iwa5803 | Hou et al. [53] | |||||||
| QYr.sicau-5D | IT | BLUE_ALL | 1,099,801 | – | 3.55 | 0.19 | – | – | – |
| QYr.sicau-6A.1 | IT | 2016 M | 1,204,251 | 36.52 | 3.16 | 0.18 | New | ||
| QYr.sicau-6A.2 | DS | 2017 M | 1,695,635 | 87.39 | 3.83 | 0.21 | New | ||
| DS | 2017 M | 3,955,268 | 87.60 | 3.29 | 0.18 | ||||
| QYr.sicau-6A.3 | DS | 2017 M | Xgwm169–4 | – | 4.35 | 0.25 | New | ||
| DS | 2017 M | Xgwm169–9 | – | 3.15 | 0.17 | ||||
| QYr.sicau-6B | DS | 2017 M | 3,025,054 | 31.19 | 3.34 | 0.18 | Yr78 | Xwmc737-IWA7257 | Dong et al. [56] |
| DS | 2017 M | 1,074,322 | 26.85 | 3.69 | 0.21 | QYrst.wgp-6BS.2 | Xgwm132-Xgdm113 | Santra et al. [57] | |
| QYr.sicau-6D | IT | 2016C | Xcfd95–2 | – | 3.15 | 0.13 | QYr.ufs-6D | Xgwm325-Xbarc175 | Agenbag et al. [58] |
| YrH9020a | Xbarc202-Xbarc96 | Liu et al. [59] | |||||||
| QYr.sicau-7B | IT | BLUE_ALL | 5,010,940 | – | 3.41 | 0.15 | – | – | – |
| QYr.sicau-7D.1 | DS | 2017 M | 995,958 | 65.83 | 4.12 | 0.23 | New | ||
| BLUE_ALL | 995,958 | 65.83 | 3.16 | 0.17 | |||||
| QYr.sicau-7D.2 | DS | 2016 M | 1,095,389 | 94.32 | 3.54 | 0.16 | New | ||
| 993,762 | 97.09 | 3.54 | 0.16 | ||||||
| QYr.sicau-7D.3 | IT | BLUE_ALL | 4,004,033 | – | 3.13 | 0.17 | – | – | – |
a Four environments in this study, where 2016M = 2016 Mianyang, 2016C = 2016 Chongzhou, 2017M = 2017 Mianyang, 2017C = 2017 Chongzhou; BLUE_ALL was obtained across environments considering genotypes as a fixed effect in the model
b The markers were positioned on the DArT-seq consensus map version 4.0 provided by Diversity Arrays Technology (https://www.diversityarrays.com)
c Yr genes or QTL reported in previous studies, “-” indicates the QTL detected in the present study that could not be localized on the integrated map, “New” indicates the QTL detected in the present study that have not been reported preciously
d The interval of the reported QTL or genes on the integrated map of previously reported stripe rust resistance genes and QTL (Additional file 6)