Table 6.
Main features related to the specific mers identified in X. fastidiosa subspecies
| A. X. fastidiosa subspecies | FAS1 | FAS21 | SAN1 | SAN21 | MOR1 | MUL1 | PAU1 | |
| number of mers | 2905 | 1978 | 9808 | 5765 | 3094 | 4906 | 11,365 | |
| number of unique mers | 2836 | 1957 | 9431 | 5636 | 2995 | 4813 | 11,162 | |
| total mer size (bp) | 133,179 | 85,038 | 518,683 | 292,740 | 142,614 | 258,228 | 627,685 | |
| number of mers in CDS | 2172 | 1411 | 7783 | 4161 | 2341 | 3603 | 9088 | |
| number of unique CDS | 1142 | 811 | 2406 | 1646 | 1115 | 1119 | 1711 | |
| total mer size in CDS (bp) | 100,015 | 60,092 | 414,736 | 215,901 | 108,336 | 189,973 | 504,054 | |
| number of mers in intergenic regions | 733 | 567 | 2025 | 1604 | 753 | 1303 | 2277 | |
| total mer size in intergenic regions (bp) | 33,164 | 24,946 | 103,947 | 76,839 | 34,278 | 68,255 | 123,631 | |
| B. Combination morus + other subspecies | MOR-FAS1 | MOR-FAS21 | MOR-SAN1 | MOR-SAN21 | MOR-SAN-SAN21 | MOR-SAN-SAN2-FAS21 | MOR-MUL1 | MOR-PAU1 |
| number of mers | 495 | 1236 | 352 | 371 | 237 | 3389 | 2131 | 71 |
| number of unique mers | 491 | 1222 | 347 | 358 | 235 | 3369 | 2072 | 71 |
| total mer size (bp) | 20,058 | 53,052 | 13,123 | 14,066 | 8019 | 136,470 | 98,450 | 2377 |
| number of mers in CDS | 331 | 825 | 258 | 243 | 116 | 2367 | 1638 | 58 |
| number of unique CDS | 216 | 430 | 192 | 178 | 103 | 806 | 572 | 41 |
| total mer size in CDS (bp) | 13,428 | 36,147 | 9816 | 9275 | 4249 | 96,946 | 76,167 | 2018 |
| number of mers in intergenic regions | 164 | 411 | 94 | 128 | 121 | 1022 | 493 | 13 |
| total mer size in intergenic regions (bp) | 6630 | 16,905 | 3307 | 4791 | 3770 | 39,524 | 22,283 | 359 |
| C. Within subspecies pauca | pauca I.11 | pauca I.21 | pauca I.31 | CFBP 80721 | Hib41 | |||
| number of mers | 1266 | 2360 | 3885 | 4775 | 4694 | |||
| number of unique mers | 1238 | 2323 | 3644 | 4663 | 4596 | |||
| total mer size (bp) | 59,733 | 121,367 | 207,098 | 283,540 | 341,563 | |||
| number of mers in CDS | 1003 | 1776 | 3194 | 3150 | 3338 | |||
| number of unique CDS | 486 | 716 | 1147 | 1205 | 1324 | |||
| total mer size in CDS (bp) | 47,655 | 92,528 | 173,936 | 194,240 | 269,888 | |||
| number of mers in intergenic regions | 263 | 584 | 690 | 1625 | 1356 | |||
| total mer size in intergenic regions (bp) | 12,078 | 28,839 | 33,162 | 89,300 | 71,675 | |||
1Composition of the groups:
MOR (subsp. morus): Mul-MD and Mul0034 (Reference: 2,666,577 bp). FAS (subsp. fastidiosa): ATCC 35879, DSM 10026, CFBP 7969, CFBP 7970, CFBP 8071, CFBP 8082, CFBP 8351, EB92–1, GB514, M23, Stag’s Leap and Temecula1 (Reference: 2,521,148 bp). FAS2 (subsp. fastidiosa): All the members of the group FAS (with Temecula1 as reference), plus CFBP 8073. MUL (subsp. multiplex): ATCC 35871, BB01, CFBP 8078, CFBP 8416, CFBP 8417, CFBP 8418, Dixon, Griffin-1, Sy-VA and M12 (Reference: 2,475,130 bp). SAN (subsp. sandyi): Ann-1 (Reference: 2,780,908 bp). SAN2 (subsp. sandyi-like): CFBP 8356 and CO33 (Reference: 2,416,985 bp). PAU (subsp. pauca): 32, 3124, 11,399, 6c, CFBP 8072, CoDiRO, COF0324, COF0407, CVC0251, CVC0256, Fb7, Hib4, J1a12, OLS0478, OLS0479, Pr8x, U24D and 9a5c (Reference: 2,731,750 bp). pauca I.1 (subsp. pauca): U24D, Fb7, CVC0251, CVC0256, J1a12, 11,399, 3124, 32 and 9a5c (Reference: 2,731,750 bp). pauca I.2 (subsp. pauca): 6c, COF0324 and Pr8x (Reference: 2,666,242 bp). pauca I.3 (subsp. pauca): COF0407, OLS0478, OLS0479 and CoDiRO (Reference: 2,542,932 bp). CFBP 8072 (subsp. pauca; 2,496,662 bp). Hib4 (subsp. pauca; 2,877,548 bp)