Table 2.
Sample/test | Primer set | Dilution | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
10−1 | 10−2 | 10−3 | 10−4 | 10−5 | 10−6 | 10−7 | 10−8 | 10−9 | ||
NC‐88‐23626 | ||||||||||
RT‐LAMP (T p) | P1 | 07:30 | 07:20 | 08:00 | 09:00 | 12:25 | 12:45a | 12:30a | No T p | No T p |
P2 | 06:55 | 07:40 | 09:05 | 10:35 | 16:45a | No T p | No T p | No T p | No T p | |
rRT‐PCR (C T) | 18.97 | 22.29 | 25.67 | 29.01 | 32.30 | 35.67 | 38.49 | 40.86a | Undet. | |
LA‐97‐1278 | ||||||||||
RT‐LAMP (T p) | P1 | 06:50 | 07:10 | 08:30 | 09:05 | 11:20 | 14:50 | 12:15a | No T p | No T p |
P2 | 08:05 | 09:10 | 10:50 | 13:35 | No T p | No T p | No T p | No T p | No T p | |
rRT‐PCR (C T) | 17.00 | 20.24 | 23.57 | 26.96 | 30.45 | 33.74 | 37.19 | 39.85b | Undet. |
Values are means of three replicates. NC‐88‐23626 and LA‐97‐1278 are SVV‐1 isolates.
P1: primer set 1, P2: primer set 2.
C T/T p values for only one well.
C T/T p values for only two wells. Undet. C T value undetermined by rRT‐PCR.