KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Rabbit polyclonal anti-phospho-Histone H3 (Ser10) | Cell Signaling Technology | Cat#9701; RRID:AB_331535 |
| Mouse polyclonal anti-phospho-Histone H3 (Ser10) | Cell Signaling Technology | Cat#9706; RRID:AB_331748 |
| Rabbit polyclonal anti-Mef-2 | Santa Cruz Biotechnology | Cat#sc-313; RRID:AB_631920 |
| Mouse monoclonal anti-PCNA | Sigma-Aldrich | Cat#P8825; RRID:AB_477413 |
| Rabbit monoclonal anti-HNF-4-alpha | Abcam | Cat#ab201460 |
| Mouse monoclonal anti-Troponin T | Lab Vision | Cat#MS-295-PABX; RRID:AB_61810 |
| Mouse monoclonal anti-cardiac Troponin T | Abcam | Cat#ab33589; RRID:AB_727035 |
| Mouse monoclonal anti-Ki-67 | Cell Marque Corp | Cat#275R; RRID:AB_1158031 |
| Rat monoclonal anti-Ki-67, eFlour 570 conjugated | Thermo Fisher Scientific | Cat#41-5698-80; RRID:AB_11219874 |
| Mouse monoclonal anti-p63 | Biocare Medical | Cat#CM163A; RRID:AB_10582730 |
| Alexa Fluor 488 Goat anti-Rabbit IgG (H+L) | Thermo Fisher Scientific | Cat#A-11034; RRID:AB_2576217 |
| Alexa Fluor 488 Goat anti-Mouse IgG (H+L) | Thermo Fisher Scientific | Cat#A-11001; RRID:AB_2534069 |
| Alexa Fluor 546 Goat anti-Rabbit IgG (H+L) | Thermo Fisher Scientific | Cat#A-11035; RRID:AB_143051 |
| Alexa Fluor 546 Goat anti-Mouse IgG (H+L) | Thermo Fisher Scientific | Cat#A-11030; RRID:AB_144695 |
| Alexa Fluor 594 Goat anti-Rabbit IgG (H+L) | Thermo Fisher Scientific | Cat#A-11037; RRID:AB_2534095 |
| Alexa Fluor 594 Goat anti-Mouse IgG (H+L) | Thermo Fisher Scientific | Cat#A-11032; RRID:AB_141672 |
| Chemicals, Peptides, and Recombinant Proteins | ||
| Metronidazole | Sigma-Aldrich | Cat#M1547 |
| Fibronectin | Thermo Fisher Scientific | Cat#33010018 |
| 5-ethynyl-2’-deoxyuridine | Thermo Fisher Scientific | Cat#A10044 |
| AG-1478 | Selleck Chemicals | Cat#S2728 |
| Alfacalcidol | Selleck Chemicals | Cat#S1468 |
| Calcitriol | Selleck Chemicals | Cat#S1466 |
| DAPI | Thermo Fisher Scientific | Cat#D3571 |
| Alexa Fluor 488 Azide | Thermo Fisher Scientific | Cat#A10266 |
| Alexa Fluor 594 Azide | Thermo Fisher Scientific | Cat#A10270 |
| Alexa Fluor 488 Click-iT Plus TUNEL Assay | Thermo Fisher Scientific | Cat#C10617 |
| Prestwick Chemical Library | Prestwick Chemical | N/A |
| PS121912 | University of Wisconsin-Milwaukee | N/A |
| Experimental Models: Organisms/Strains | ||
| Zebrafish: Tg(cmlc2:mCherry-zCdt1)pd57 | (Choi et al., 2013) | pd57 |
| Zebrafish: Tg(cmlc2:Venus-hGeminin)pd58 | (Choi et al., 2013) | pd58 |
| Zebrafish: Tg(cmlc2:H2A-EGFP)pd115 | (Foglia et al., 2016) | pd115 |
| Zebrafish: Tg(tcf21:mAG-zGeminin)pd254 | (Cao et al., 2017) | pd254 |
| Zebrafish: Tg(tcf21:zCdt1-mKO2)pd255 | (Cao et al., 2017) | pd255 |
| Zebrafish: Tg(kdrl:H2B-EGFP)mu122 | (Kochhan et al., 2013) | mu122 |
| Zebrafish: Tg(bactin2:loxP-mCherry-STOP-loxP-DTA176)pd36 | (Wang et al., 2011) | pd36 |
| Zebrafish: Tg(Tp1:H2B-mCherry) | (Ninov et al., 2012) | N/A |
| Zebrafish: Tg(fabp10a:nls-mCherry) | (Choi et al., 2014) | N/A |
| Zebrafish: Tg(krtt1c19e:H2A-m Cherry)pd309 | This paper | pd309 |
| Zebrafish: Tg(osx:mCherry-zCdt1)pd270 | Unpublished | pd270 |
| Zebrafish: Tg(osx:Venus-hGeminin)pd271 | Unpublished | pd271 |
| Zebrafish: cyp24a1mGFP | This paper | pd272 |
| Zebrafish: Tg(ubb:cyp24a1) pd273 | This paper | pd273 |
| Zebrafish: Tg(ubb:cyp24a1)pd274 | This paper | pd274 |
| Zebrafish: Tg(hsp70:dn-vdra)pd276 | This paper | pd276 |
| Zebrafish: Tg(cmlc2:dn-vdra)pd301 | This paper | pd301 |
| Zebrafish: Tg(cmlc2:ca-vdra)pd302 | This paper | pd302 |
| Zebrafish: Tg(fabp10a:dn-vdra)pd303 | This paper | pd303 |
| Zebrafish: Tg(fabp10a:ca-vdra)pd304 | This paper | pd304 |
| Zebrafish: vdrapd307 | This paper | pd307 |
| Zebrafish: vdrbpd308 | This paper | pd308 |
| Software and Algorithms | ||
| Tophat2 | (Kim et al., 2013) | Version 2.1.1 |
| featureCounts | (Liao et al., 2014) | Version 1.5.3 |
| edgeR | (Robinson et al., 2010) | Version 3.20.9 |
| DAVID Bioinformatics Resources | (Huang da et al., 2009) | Version 6.8 |
| Ingenuity Pathway Analysis | Qiagen, (Kramer et al., 2014) | 830011 |