Table 3.
Five most prevalent families regarding the material and result set in decreasing prevalence.
| Culture | PCR-DGGE-Sa | Joined resultsb | |
|---|---|---|---|
| Cc | Enterobacteriaceae | Enterobacteriaceae | Enterobacteriaceae |
| Enterococcaceae | Enterococcaceae | Enterococcaceae | |
| Staphylococcaceae | Actinomycetaceae | Actinomycetaceae | |
| Pseudomonadaceae | Propionibacteriaceae | Staphylococcaceae | |
| Streptococcaceae | Staphylococcaceae | Propionibacteriaceae | |
| CUd | Enterobacteriaceae | Enterobacteriaceae | Enterobacteriaceae |
| Enterococcaceae | Enterococcaceae | Enterococcaceae | |
| Staphylococcaceae | Actinomycetaceae | Actinomycetaceae | |
| Pseudomonadaceae | Propionibacteriaceae | Staphylococcaceae | |
| Alcaligenaceae | Campylobacteraceae | Pseudomonadaceae | |
| DJCPe | Enterobacteriaceae | Enterobacteriaceae | Enterobacteriaceae |
| Staphylococcaceae | Actinomycetaceae | Enterococcaceae | |
| Enterococcaceae | Enterococcaceae | Staphylococcaceae | |
| Streptococcaceae | Propionibacteriaceae | Actinomycetaceae | |
| Pseudomonadaceae | Bifidobacteriaceae | Propionibacteriaceae | |
| DJCDf | Enterobacteriaceae | Enterobacteriaceae | Enterobacteriaceae |
| Enterococcaceae | Actinomycetaceae | Enterococcaceae | |
| Staphylococcaceae | Enterococcaceae | Actinomycetaceae | |
| Pseudomonadaceae | Bifidobacteriaceae | Staphylococcaceae | |
| Streptococcaceae | Propionibacteriaceae | Bifidobacteriaceae | |
| DJCUg | Enterobacteriaceae | Enterobacteriaceae | Enterobacteriaceae |
| Enterococcaceae | Actinomycetaceae | Actinomycetaceae | |
| Staphylococcaceae | Bifidobacteriaceae | Bifidobacteriaceae | |
| Pseudomonadaceae | Corynebacteriaceae | Corynebacteriaceae | |
| Streptococcaceae | Staphylococcaceae | Staphylococcaceae | |
| Total results | Enterobacteriaceae | Enterobacteriaceae | Enterobacteriaceae |
| Enterococcaceae | Actinomycetaceae | Enterococcaceae | |
| Staphylococcaceae | Enterococcaceae | Actinomycetaceae | |
| Pseudomonadaceae | Propionibacteriaceae | Staphylococcaceae | |
| Streptococcaceae | Staphylococcaceae | Propionibacteriaceae |
a
PCR-DGGE-S, PCR denaturing gradient gel electrophoresis, Sanger sequencing;
b
Joined results are union of culture and PCR-DGGE-S result subsets;
c
C: catheters;
d
CU: catheter urine;
e
DJCP, proximal tip of double-J catheter;
f
DJCD, distal tip of double-J catheter;
g
DJCU, double-J catheter urine.