Table 2.
SNPs resulting in amino acid changes in distinct protein products, possibly influencing their function
| SNP by position | Name and function of the affected gene |
|---|---|
|
229,835/Reference Position = 229,964; Gene: cypC Amino Acid Change = Cys147Tyr |
Fatty-acid peroxygenase; catalyzes the alpha- and beta-hydroxylation of myristic acid in the presence of hydrogen peroxide |
|
284,058/Reference Position = 284,187; Gene: phoD Amino Acid Change = Asn59Lys |
Alkaline phosphatase D |
|
325,419/Reference Position = 325,548 Gene: ycgA Amino Acid Change = Arg70Ser |
Integral inner membrane protein |
|
431,730/Reference Position = 431,866 Gene: yclM Amino Acid Change = His41Arg |
Aspartokinase 3 |
|
453,244/Reference Position = 453,384 Gene: ycsA Amino Acid Change = Ser185Arg |
Tartrate dehydrogenase/decarboxylase |
|
746,223/Reference Position = 766,594 Gene: yesS Amino Acid Change = Lys253Glu |
AraC family transcriptional regulator; probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization |
|
914,199/Reference Position = 934,570 Gene: yfhP Amino Acidid Change = Pro291Thr |
Uncharacterized protein; may act as a negative regulator for the transcription of yfhQ, fabL, sspE and yfhP |
|
1,202,445 /Reference Position = 1,222,831 Gene: oppC Amino Acid Change = Trp100* |
Oligopeptide transport system permease protein |
|
1,243,898 /Reference Position = 1,264,284 Gene: yjcM Amino Acid Change = Lys216Asn |
Uncharacterized protein |
|
1,655,463 /Reference Position = 1,675,849 Gene: trmD Amino Acid Change = His227Tyr |
tRNA (guanine-N(1)-)-methyltransferase; specifically methylates guanosine-37 in various tRNAs |
|
2,154,053 /Reference Position = 2,174,438 Gene: yorO Amino Acid Change = Arg38Gly |
SPBc2 prophage-derived uncharacterized protein YorO |
|
2,195,691 /Reference Position = 2,216,076; Gene: yopA Amino Acid Change = Trp234* |
SPBc2 prophage-derived uncharacterized protein YopA |
|
2,382,673 /Reference Position = 2,403,064 Gene: gudB Amino Acid Change = Ala96Glu |
Cryptic catabolic NAD-specific glutamate dehydrogenase |
|
2,841,739 /Reference Position = 2,862,132 Gene: radC Amino Acid Change = Leu135Ser |
Putative DNA repair protein |
|
3,078,981 /Reference Position = 3,099,373 Gene: amyD Amino Acid Change = His84Leu |
Putative ABC transporter permease protein |
|
3,953,514 /Reference Position = 3,973,920 Gene: cydD Amino Acid Change = Ser391Phe |
ATP-binding/permease protein |