Table 1.
PERMANOVA | PERMDISP | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p‐value | F | r 2 | p‐value | F | Mean bef | Mean aft | |||||||
Bef/Aft | Person | Interact. | Bef/Aft | Person | Interact. | Bef/Aft | Person | Interact. | |||||
Taxonomic levels | |||||||||||||
Phylum | 0.001 | 0.006 | 0.017 | 19.88 | 8.34 | 5.38 | 0.32 | 0.14 | 0.09 | 0.501 | 0.53 | 0.19 | 0.16 |
Class | 0.001 | 0.004 | 0.055 | 18.32 | 6.29 | 2.65 | 0.33 | 0.11 | 0.05 | 0.197 | 1.74 | 0.20 | 0.25 |
Order | 0.001 | 0.009 | 0.093 | 18.31 | 4.92 | 2.03 | 0.34 | 0.09 | 0.04 | 0.012 | 7.01 | 0.21 | 0.32 |
Family | 0.001 | 0.001 | 0.093 | 14.80 | 5.81 | 2.08 | 0.29 | 0.11 | 0.04 | 0.035 | 4.60 | 0.30 | 0.41 |
Genus | 0.001 | 0.003 | 0.086 | 13.22 | 5.65 | 1.89 | 0.27 | 0.12 | 0.04 | 0.029 | 5.42 | 0.32 | 0.44 |
OTU | 0.001 | 0.002 | 0.085 | 8..68 | 5.55 | 1.78 | 0.20 | 0.13 | 0.04 | 0.001 | 11.74 | 0.34 | 0.51 |
OTU level within Phyla/Class | |||||||||||||
Actinobacteria | 0.001 | 0.001 | 0.011 | 9.63 | 7.39 | 2.97 | 0.20 | 0.15 | 0.06 | 0.02 | 6.77 | 0.38 | 0.49 |
Bacteroidetes | 0.001 | 0.007 | 0.524 | 2.21 | 1.69 | 0.95 | 0.07 | 0.05 | 0.03 | 0.145 | 2.18 | 0.63 | 0.67 |
Firmicutes | 0.009 | 0.005 | 0.394 | 4.36 | 4.83 | 0.90 | 0.11 | 0.13 | 0.02 | 0.048 | 4.55 | 0.30 | 0.45 |
Proteobacteria | 0.001 | 0.023 | 0.536 | 8.45 | 3.18 | 0.77 | 0.21 | 0.08 | 0.02 | 0.006 | 8.32 | 0.31 | 0.49 |
Alphaproteobacteria | 0.001 | 0.693 | 0.861 | 9.10 | 0.71 | 0.59 | 0.24 | 0.02 | 0.02 | 0.944 | 0.01 | 0.49 | 0.49 |
Betaproteobacteria | 0.001 | 0.003 | 0.473 | 4.48 | 2.53 | 0.95 | 0.12 | 0.07 | 0.03 | 0.745 | 0.11 | 0.59 | 0.57 |
Gammaproteobacteria | 0.002 | 0.009 | 0.492 | 4.34 | 3.71 | 0.86 | 0.12 | 0.10 | 0.02 | 0.006 | 9.50 | 0.29 | 0.51 |
Results of permutational multivariate analysis of variance (PERMANOVA) with two factors (before/after, study person and their interaction) and results of the analysis of multivariate homogeneity of group dispersions (PERMDISP). Bray‐Curtis dissimilarity was used. Analyses were not done for phylum Acidobacteria and class Deltaproteobacteria because several samples did not include any bacteria belonging to these two taxa. For PERMDISP, also the mean values for the distances to group medians are shown. Each of the sixteen materials was tested once by one of the two study participants. P‐values less than 0.05 are highlighted in bold.