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. 2019 Mar 27;14(3):e0214318. doi: 10.1371/journal.pone.0214318

Table 4. Mutations defined as pathogenic in previous cohorts.

Publication Nr of POLE mutated tumors Sequencing method Mutations included in the “POLE mutated” group Definition of pathogenic mutation
Tomlinson et al 2013 14 Sanger sequencing (codons 268–471) P286R, S297P, V411L, A456P, A275V Predictive and functional analysis
McAlpine et al 2015 39 Sanger sequencing exons 9 to 14 P286R, S297P, V411L, A456P, M295R, F367S/C, P436R, L424P, P441L, F367L, E396G
Ngeow et al 2016 12 Nextgeneration sequencing and sanger sequencing to confirm P286R, V411L, A456P, S459F A465F, M444K, S459P In silico testing of mutations to define pathogenity
Billingsley et al 2015 and Goodfellow et al 2017 40/39 Sanger sequencing (residues 268–471) P286R, S297P, V411L, A456P, P436R, A465F, A426V assessed using mutation assessment prediction programs
Bosse et al 2015 63 Sanger sequencing exon 9 and 13 (PORTEC) P286R, S297P, V411L, M299V, S297T defined as pathogenic POLE proofreading mutations as variants absent from public germline sequence databases and previously confirmed as somatic variants associated with tumor ultramutation
Köbel et al 2014 8 Sanger sequencing exon 9–13 P286R, V411L, T278M, S297P all mutation positive samples

References [10,4044]