Table 3.
MHC II epitpoe analysis using IEDB server and their toxicity and antigenicity analysis.
| S.No. | Name | Uniport ID | Start | End | Epitope | IEDB (percentile rank) | Toxicity | Antigencity |
|---|---|---|---|---|---|---|---|---|
| 1 | Type II secretion system protein D | P35818 | 74 | 88 | GETFVVDPRVKGQVS | HLA-DRB1*11:01(0.19) | Non- toxin | 0.7776 |
| 2 | Uncharacterized protein | Q9I3A9 | 665 | 679 | ALELAGVLQQRLDDQ | HLA-DRB4*01:01(0.13) | Non- toxin | 0.8109 |
| 3 | Uncharacterized protein | Q9I6G3 | 471 | 485 | GGPVLLDQRLSGDTS | HLA-DRB1*03:01(0.05) | Non- toxin | 0.7245 |
| 4 | Pyroglutatmate porin OpdO | Q9I202 | 266 | 280 | RAFGALFSLRLGAHA | HLA-DRB1*09:01(0.01) | Non- toxin | 1.0951 |
| 182 | 196 | SSDYQVFSANRIGGR | HLA-DRB1*07:01(0.24) | Non- toxin | 0.6490 | |||
| 5 | Probable porin | Q9I4U9 | 58 | 72 | QGFLLRYESGYTEGL | HLA-DRB1*15:01(0.14) | Non- toxin | 0.7220 |
| 6 | Probable TonB-dependent receptor | Q9I2I2 | 431 | 445 | KAPSLKQLSPEYAAV | HLA-DRB1*09:01(0.03) | Non- toxin | 0.6907 |
| 10 | 24 | LPPLRLARAVPFLYL | HLA-DRB3*02:02(0.06) | Non- toxin | 1.0610 | |||
| 536 | 550 | WELNYTYLDARNRTA | HLA-DRB5*01:01(0.15) | Non- toxin | 0.9702 | |||
| 7 | Uncharacterized protein | Q9I792 | 519 | 533 | GNAIELDARGRYFAA | HLA-DRB1*03:01(0.02) | Non- toxin | 0.6998 |
| 8 | Probable outer membrane protein | Q9HVJ4 | 204 | 218 | DAKYRAGAAALSDRL | HLA-DRB1*09:01(0.02) | Non- toxin | 0.7788 |
| 163 | 177 | ATLQNTFALAAQAYY | HLA-DQA1*01:02/DQB1*06:02(0.16) | Non- toxin | 0.5764 | |||
| 9 | Probable outer membrane protein | Q9HYK0 | 405 | 419 | AEARYAYLNAWLRLR | HLA-DRB5*01:01(0.01) | Non- toxin | 0.7184 |
| 84 | 98 | ERDYRSYASTLSLEQ | HLA-DRB1*04:01(0.17) | Non- toxin | 0.5761 | |||
| 10 | Patatin-like protein, PlpD | Q9HYQ6 | 467 | 481 | VGSRYFVAPFLFHEA | HLA-DPA1*01:03/DPB1*02:01(0.01) | Non- toxin | 0.5079 |
| 2 | 16 | RRLLLVLLLLLPLSA | HLA-DPA1*03:01/DPB1*04:02(0.01) | Non- toxin | 1.6032 | |||
| 294 | 308 | IDAGYRATTVLAARL | HLA-DQA1*01:02/DQB1*06:02(0.02) | Non- toxin | 0.6612 | |||
| 5 | 19 | LLVLLLLLPLSALAA | HLA-DRB1*01:01(0.14) | Non- toxin | 1.3696 | |||
| 586 | 600 | RQWDLRLNKALSFGA | HLA-DRB3*02:02(0.16) | Non- toxin | 1.3838 | |||
| 11 | Probable tonB-dependent receptor | Q9I473 | 369 | 383 | QLSLRRDDNQQFGVH | HLA-DRB3*01:01(0.01) | Non- toxin | 0.8807 |
| 232 | 246 | DNGLELDGTLLRAKS | HLA-DRB1*03:01(0.03) | Non- toxin | 1.0111 | |||
| 212 | 226 | EPDRDGYRNLSGNLR | HLA-DRB5*01:01(0.14) | Non- toxin | 0.7545 |