Table 5.

Comparative prediction of MHC I, II and B cell epitopes and epitopes physiochemical analysis.

S.No.	Name	Start	MHC II epitope	Hydro-phobicity	Start	MHC I Epitope	Hydro-phobicity	Start	B cell epitope	Hydrophobicity
1	P35818,Type II secretion system protein D	74	GETFVVDPRVKGQVS	−0.213	49	QEAHWTINL	−0.578	124	IVPNAEAKTEAGGG	−0.271
2	Q9I3A9, Uncharacterized protein	665	ALELAGVLQQRLDDQ	−0.193	458	SPRLAVNYL	0.211	164	PGESPGT	−1.286
3	Q9I6G3, Uncharacterized protein	471	GGPVLLDQRLSGDTS	−0.300	542	LEASLGWRL	0.344	219	NPGLNAEYPAGTGCCSDGES	−0.675
4	Q9I202, Pyroglutatmate porin OpdO	266	RAFGALFSLRLGAHA	0.693	319	RSWQLRYDY	−1.833	90	DSGSGSGGTGLLPA	−0.057
5	Q9I4U9, Probable porin	58	QGFLLRYESGYTEGL	−0.407	325	RSWQLRYDY	−1.833	260	RSTDEGGSRVNNRA	−1.757
					64	YESGYTEGL	−0.900
6	Q9I2I2, Probable TonB-dependent receptor	10	LPPLRLARAVPFLYL	0.967	522	LELGGGVDL	0.822	353	WRKEELEDRSVNTAGDAS	−1.439
7	Q9I792, Uncharacterized protein	519	GNAIELDARGRYFAA	−0.220	554	IYFRVDAFF	1.067	392	QGRGHPQAGDPNAR	−1.929
8	Q9HVJ4, Probable outer membrane protein	204	DAKYRAGAAALSDRL	−0.387	119	GEYGTRFSL	−0.556	342	RDRYSEGGGDNSRS	−2.314
9	Q9HYK0, Probable outer membrane protein	405	AEARYAYLNAWLRLR	−0.360	356	LAKVRAYEM	0.033	169	FEEGEGTRTDLLET	−1.036
10	Q9HYQ6, Patatin-like protein, PlpD	467	VGSRYFVAPFLFHEA	0.593	470	RYFVAPFLF	1.200	90	ALSDAPPRKDVPFRRKQDDR	−1.725
		2	RRLLLVLLLLLPLSA	1.920
11	Q9I473, Probable tonB-dependent receptor	232	DNGLELDGTLLRAKS	−0.513	590	FGADHETAY	−0.689	175	EGSAGVSGGAGNGW	−0.293
12	Q9I0E2, OpdB proline porin	—	—		137	GEMTVETPVF	0.270	70	DLESAYTPGRVGFGLDLHGF	−0.060
13	Q9I0W0, Outer membrane protein CzcC	—	—		334	LLRLRSEAV	0.456	283	SKYDQTARDGRGER	−2.371
14	Q9HU51, Uncharacterized protein	—	—		—	—		316	GSQRGDDPRAKWDG	−2.114
15	Q9I319, Uncharacterized protein	—	—		—	—		315	DSEEGGGAGNGAVG	−0.671