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. 2019 Mar 28;14(3):e0214025. doi: 10.1371/journal.pone.0214025

Table 1. List of 108 SSCGs identified from A. duranensis and A. ipaensis by comparative transcriptome sequencing.

ID Gene symbol Chromosomal location Nonseed FPKM Seed FPKM Seed FPKM/Nonseed FPKM Putative function
SSCG1 Araip.D61U9 B06:22151849..22156660 9.6 40464.62 3817.41698 Nutrient reservoir protein, putative
SSCG2 Aradu.F9TAJ A06:1278068..1286732 7.9 29576.44 3743.85316 Nutrient reservoir protein, putative
SSCG3 Aradu.YGS80 A06:1778238..1782613 6.13 23996.24 3914.55791 Nutrient reservoir protein, putative
SSCG4 Araip.T82B5 B09:145805360..145809988 5.48 17844.62 3256.31752 Vicilin 47 kDa protein
SSCG5 Araip.WQE9Q B06:19983167..19987898 3.65 11809.74 3235.54521 Nutrient reservoir, putative
SSCG6 Aradu.2H0R0 A09:111189111..111193663 2.85 11232.05 3941.07018 Allergen gly M Bd 28 kDa protein
SSCG7 Aradu.YBK6Q A06:1263038..1268055 1.84 7346.02 3992.40217 Nutrient reservoir, putative
SSCG8 Aradu.B98FL A02:14075236..14078402 1.15 4528.01 3937.4 Nutrient reservoir protein, putative
SSCG9 Araip.5JB56 B06:21966364..21970937 0.88 3850.03 4375.03409 Nutrient reservoir protein, putative
SSCG10 Aradu.I3E1J A01:95190268..95194982 0.94 3292.1 3502.23404 PREDICTED: desiccation-related protein PCC13-62-like [Glycine max]
SSCG11 Araip.CF8RS B01:132019082..132024234 0.93 2692.8 2895.48387 PREDICTED: desiccation-related protein PCC13-62-like [Glycine max]
SSCG12 Araip.4G9JR B07:124167306..124175151 4.16 2538.22 610.149038 PREDICTED: uncharacterized protein LOC100803807 isoform X4 [Glycine max]
SSCG13 Araip.16S9Q B06:1939514..1945848 0.71 2002.03 2819.76056 Allergen gly M Bd 28 kDa protein
SSCG14 Araip.DH1Z0 B08:1478391..1487297 1.74 1730.87 994.752874 Seed linoleate 9S-lipoxygenase
SSCG15 Araip.UPW6L B06:13539947..13544474 0.58 1639.78 2827.2069 Short-chain dehydrogenase-reductase B
SSCG16 Araip.XV8NA B09:121459378..121466147 0.91 1567.95 1723.02198 Caleosin-related family protein
SSCG17 Araip.930A9 B07:103614634..103618108 0.37 1391.54 3760.91892 Plant EC metallothionein-like protein
SSCG18 Aradu.L7CNH A07:57016256..57019539 0.75 1093.32 1457.76 Dehydrin family protein
SSCG19 Araip.GWR7V B06:3643904..3647892 0.38 1236.21 3253.18421 Seed maturation protein
SSCG20 Aradu.P54FB A06:4694298..4698399 1.25 1207.86 966.288 Short-chain dehydrogenase-reductase B
SSCG21 Aradu.CPR44 A08:16217242..16225065 1.32 1127.39 854.083333 PREDICTED: uncharacterized protein LOC100803807 isoform X4 [Glycine max]
SSCG22 Araip.TR541 B07:64847542..64850823 0.27 935.31 3464.11111 Dehydrin family protein
SSCG23 Araip.E99Y9 B08:1487051..1496731 2.19 885.49 404.333333 Seed linoleate 9S-lipoxygenase
SSCG24 Aradu.A02RY A06:12429384..12433425 0.36 868.98 2413.83333 Seed maturation protein
SSCG25 Aradu.8NU6I A03:108778760..108781946 7.04 778.99 110.651989 Unknown protein
SSCG26 Araip.GVB7U B02:104940525..104947120 0.1 764.27 7642.7 Adenine nucleotide α-hydrolase-like superfamily protein
SSCG27 Aradu.TC8DF A09:100677241..100681879 0.15 749.56 4997.06667 Caleosin-related family protein
SSCG28 Aradu.DWL7L A05:84098086..84102786 0.46 706.68 1536.26087 Water-selective transport intrinsic membrane protein 1
SSCG29 Aradu.YC8MH A05:9432005..9436963 0.36 705.76 1960.44444 Nutrient reservoir, putative
SSCG30 Araip.MGW36 B05:10060638..10064989 0.44 699.31 1589.34091 Allergen gly M Bd 28 kDa protein
SSCG31 Araip.SK1EN B06:21959550..21964666 0.11 660.71 6006.45455 Nutrient reservoir, putative
SSCG32 Aradu.UQE92 A07:7869609..7873957 0.41 630.02 1536.63415 Unknown protein
SSCG33 Araip.XXN6R B05:14183132..14188591 0.37 607.63 1642.24324 PREDICTED: vacuolar-processing enzyme-like [Glycine max]
SSCG34 Araip.LJX8Z B05:144093715..144097932 0.2 595.64 2978.2 Water-selective transport intrinsic membrane protein 1
SSCG35 Aradu.F1JZ5 A05:16468072..16472629 1.5 584.6 389.733333 Hydroxysteroid dehydrogenase 5
SSCG36 Aradu.1QI16 A06:1256618..1260495 0.17 529.57 3115.11765 Nutrient reservoir, putative
SSCG37 Aradu.WX5KP A08:23296802..23303303 2.52 517.02 205.166667 Seed linoleate 9S-lipoxygenase
SSCG38 Aradu.7S7IW A03:1743950..1749685 0.23 495.13 2152.73913 Allergen gly M Bd 28 kDa protein
SSCG39 Araip.S2F61 B06:13664618..13669683 0.37 489.34 1322.54054 PREDICTED: basic 7S globulin [Glycine max]
SSCG40 Araip.YX1UI B03:132064839..132069075 0.24 484.56 2019 Alkyl hydroperoxide reductase/Thiol-specific antioxidant/Mal allergen
SSCG41 Araip.LRG7E B06:21098054..21102262 0.4 482.27 1205.675 Nutrient reservoir, putative
SSCG42 Aradu.G7AM5 A06:1289026..1294066 0.07 472.41 6748.71429 Nutrient reservoir, putative
SSCG43 Araip.213GN B08:22780923..22784155 1.49 442.09 296.704698 Defensin related
SSCG44 Aradu.I953D A06:14925068..14929464 0.09 413.62 4595.77778 Vicilin 47 kDa protein
SSCG45 Araip.IGC50 B06:22165994..22175182 0.17 399.54 2350.23529 Nutrient reservoir, putative
SSCG46 Araip.I9427 B03:3690475..3698992 0.42 399.48 951.142857 Allergen gly M Bd 28 kDa protein
SSCG47 Araip.C23HG B03:106887073..106891066 0.05 396.23 7924.6 Short-chain dehydrogenase-reductase B
SSCG48 Araip.Z0Q6Q B10:134692303..134702146 3.72 394.85 106.142473 Annexin 8
SSCG49 Araip.18621 B06:62925430..62926840 0.04 386.85 9671.25 35 kDa seed maturation protein [Glycine max]
SSCG50 Aradu.Y7IVD A05:13381777..13387424 0.33 378.86 1148.06061 PREDICTED: vacuolar-processing enzyme-like [Glycine max]
SSCG51 Araip.K8QIE B10:4310337..4313223 1.81 373.44 206.320442 Maturation protein pPM32 [Glycine max]
SSCG52 Araip.PTL0N B06:11564210..11570467 2.1 364.85 173.738095 Nodulin MtN21/EamA-like transporter family protein
SSCG53 Araip.8Y88R B07:15516942..15521234 2.43 363.4 149.547325 Sugar transporter SWEET
SSCG54 Araip.FWQ8E B10:10536351..10540643 2.43 363.4 149.547325 Sugar transporter SWEET
SSCG55 Aradu.QK6K1 A02:91132444..91136523 0.27 343.33 1271.59259 Adenine nucleotide α-hydrolase-like superfamily protein
SSCG56 Araip.U0WFW B09:145740761..145744766 5.31 343.23 64.6384181 Seed maturation protein
SSCG57 Aradu.QV0LR A03:131080569..131083815 0.31 329.27 1062.16129 1-Cysteine peroxiredoxin 1
SSCG58 Aradu.7HS2D A06:5723487..5729852 2.23 328.45 147.286996 Nodulin MtN21/EamA-like transporter family protein
SSCG59 Araip.534K5 B05:17042251..17046905 0.04 327.32 8183 Oxidoreductase, short-chain dehydrogenase/reductase family protein, expressed
SSCG60 Araip.YF7VP B10:2845816..2849609 0.14 326.69 2333.5 Protein of unknown function
SSCG61 Araip.55BM4 B06:4524371..4531866 0.06 323.4 5390 PREDICTED: probable galactinol-sucrose galactosyltransferase 2-like isoform X2 [Glycine max]
SSCG62 Aradu.ZQ8HD A06:57618672..57622857 0.3 320.3 1067.66667 35 kDa Seed maturation protein [Glycine max]
SSCG63 Aradu.F3KB2 A09:120096458..120099936 0.06 320.12 5335.33333 AWPM-19-like family protein
SSCG64 Araip.Z2VYZ B05:4533706..4536889 0.07 307.96 4399.42857 PREDICTED: ethylene-responsive transcription factor 13-like [Glycine max]
SSCG65 Aradu.KPI4B A06:110359168..110362750 4.95 301.2 60.8484848 Gibberellin-regulated family protein
SSCG66 Aradu.HX36X A08:32778205..32783203 0.24 300.89 1253.70833 Seed biotin-containing protein SBP65 [Glycine max]
SSCG67 Aradu.TVV1L A10:6209012..6213515 1.76 299.09 169.9375 Sugar transporter SWEET
SSCG68 Aradu.G1YNF A09:114688277..114693267 1.22 293.18 240.311475 Fatty acid desaturase 2
SSCG69 Aradu.Y6LUX A09:1576235..1582427 1.13 288.63 255.424779 Late embryogenesis abundant protein (LEA) family protein
SSCG70 Aradu.N27YB A09:70208795..70214429 5.56 287.19 51.6528777 PREDICTED: uncharacterized protein LOC100802932 isoform X2 [Glycine max]
SSCG71 Aradu.BXD3B A03:104961788..104965971 0.25 285.35 1141.4 Oxidoreductase, short-chain dehydrogenase/reductase family protein
SSCG72 Aradu.KQ35F A02:91130378..91134093 0 285.2 - -
SSCG73 Aradu.Z8JSI A03:127984231..127991012 0.04 268.05 6701.25 Flowering locus protein T
SSCG74 Aradu.9S6MI A06:4648907..4652669 0.62 267.51 431.467742 PREDICTED: basic 7S globulin [Glycine max]
SSCG75 Aradu.XDS84 A06:1477479..1481775 0.13 263.9 2030 Nutrient reservoir, putative
SSCG76 Araip.27I5U B03:125840273..125843558 0.39 261.23 669.820513 Gibberellin-regulated protein n = 1 Tax = Medicago truncatula
SSCG77 Araip.FYJ9U B01:123329168..123333431 4.19 259.66 61.9713604 Late embryogenesis abundant protein (LEA), putative/LEA protein, putative
SSCG78 Araip.XR8KB B10:129753362..129759594 4.64 252.97 54.5193966 PREDICTED: probable 2-Oxoglutarate/Fe(II)-dependent dioxygenase-like [Glycine max]
SSCG79 Aradu.9Z0RX A02:93238735..93243417 0.18 249.63 1386.83333 Late embryogenesis abundant protein (LEA), putative
SSCG80 Araip.JTL3L B02:12132486..12137401 0.13 249.01 1915.46154 Seed maturation protein
SSCG81 Araip.DK4JW B08:11762581..11767634 0.43 239.01 555.837209 Seed biotin-containing protein SBP65 [Glycine max]
SSCG82 Aradu.X3CG0 A02:59745890..59751117 0.03 223.67 7455.66667 Nutrient reservoir, putative
SSCG83 Araip.91947 B01:128237278..128244210 0.51 220.45 432.254902 Glutamine synthetase 2
SSCG84 Aradu.XM2MR A06:101837477..101842574 2.15 215.63 100.293023 Acyl-[acyl-carrier-protein] desaturase
SSCG85 Araip.S3GXY B09:142678437..142683138 0.63 214.14 339.904762 Fatty acid desaturase 2
SSCG86 Aradu.X9GQ3 A01:102122128..102125802 2.27 212.89 93.784141 Early nodulin related
SSCG87 Araip.H2E95 B09:132437996..132443128 0.13 212.42 1634 Papain family cysteine protease
SSCG88 Aradu.HYY79 A10:2715010..2717854 0.59 209.18 354.542373 Late embryogenesis abundant protein (LEA) group 3 protein
SSCG89 Araip.QXV0R B03:144454..148756 0.03 199.72 6657.33333 Cell wall protein EXP3
SSCG90 Aradu.FPC2C A09:111265722..111269712 0.61 187.52 307.409836 Seed maturation protein
SSCG91 Aradu.IZQ3Z A10:107916715..107927349 0.97 179.33 184.876289 Annexin 8
SSCG92 Araip.84L6B B09:2158523..2159716 0.41 176.67 430.902439 Late embryogenesis abundant protein (LEA) family protein
SSCG93 Aradu.S2SYE A08:49306243..49307719 0.07 176.31 2518.71429 Cell wall protein EXP3
SSCG94 Aradu.440M4 A08:37377595..37378358 0.21 174.86 832.666667 Defensin related
SSCG95 Araip.JYP5G B03:2187447..2191755 1.76 173.95 98.8352273 NAD+:PROTEIN (ADP-ribosyl)-transferase
SSCG96 Araip.9C0MU B04:3455685..3456542 0 173.83 - -
SSCG97 Araip.V3XTL B04:67447309..67448462 0.27 172.23 637.888889 Unknown protein
SSCG98 Aradu.80WBV A04:1154520..1168569 1.11 160.05 144.189189 Subtilisin-like serine protease 2
SSCG99 Aradu.UJ6Z9 A06:99636586..99638673 0.36 157.81 438.361111 Aldo/keto reductase family oxidoreductase
SSCG100 Aradu.UU57Q A09:120002036..120004368 0.39 157.26 403.230769 Papain family cysteine protease
SSCG101 Aradu.XGA9X A07:72920123..72923135 0.14 155.35 1109.64286 PREDICTED: transcription factor HBP-1b(c1)-like isoform X2 [Glycine max]
SSCG102 Araip.97QE1 B04:2178764..2181986 0.27 150.15 556.111111 Protein of unknown function
SSCG103 Araip.SP2PF B09:132209230..132210189 0.18 149.66 831.444444 AWPM-19-like family protein
SSCG104 Aradu.RDK4X A02:86334489..86339921 0.03 149.58 4986 PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max]
SSCG105 Araip.A9IK4 B04:7236775..7238080 0 137.8 - -
SSCG106 Araip.BIZ4B B09:2161015..2161580 0 136.04 - -
SSCG107 Araip.WF9GZ B03:128599514..128604032 0.13 134.56 1035.07692 Flowering locus protein T
SSCG108 Araip.X6DZU B02:99317123..99324724 0.16 134.51 840.6875 PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max]