Table 1. Number and chromosome location of SNPs discovered by genotyping-by-sequencing of 178 rye accessions.

Chromosome	Total SNPs	Filtered SNPs*
1R	3,468	504
2R	3,914	600
3R	3,916	605
4R	5,505	685
5R	4,774	734
6R	2,536	358
7R	3,892	551
Total	28,005	4,037

*Number of SNPs with 20% or less missing genotypes, heterozygotes less than 10% and MAF >5%