Table 2:

eQTL summary metrics for GWAS variants from the latest schizophrenia GWAS and the more general genome-wide suggestive loci from the NHGRI GWAS catalog. “# SNPs Tested” were those that were observed or imputed with high quality and that were relatively common in our samples (MAF > 5%). “Unann” = unannotated, “Tx” = transcript

	SCZD GWAS			NHGRI GWAS Catalog
	FDR<1%	FDR+Meta	Bonf<5%	FDR<1%	FDR+Meta	Bonf<5%
# SNPs Tested	106	106	106	23704	23704	23704
# SNP eQTLs	51	37	26	8988	5490	4255
> # w/o Gene	21	17	9	3763	2370	1891
> # w/o Gene+Tx	17	15	8	2982	1824	1445
> # Unann	47	28	17	5858	3470	2579
> # Only unann	7	6	3	995	671	589
> # Single Tx	11	10	5	1933	1156	976