Table 4.
Variant | Ref | Alt | Case_Ref | Case_Alt | Control_Ref | Control_Alt | OR | 95%CI | p value* |
---|---|---|---|---|---|---|---|---|---|
Chr17:78247076–78,247,076 | C | – | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78298891 | T | C | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78307986 | G | T | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78311532 | C | T | 498 | 2 | 2419 | 11 | 0.88 | (0.20–4.00) | 1.000 |
Chr17:78311620 | A | G | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78313764 | C | T | 494 | 6 | 2414 | 16 | 1.83 | (0.71–4.71) | 0.248 |
Chr17:78318465 | C | G | 496 | 4 | 2403 | 27 | 0.72 | (0.25–2.06) | 0.383 |
Chr17:78319385 | T | G | 494 | 6 | 2408 | 22 | 1.33 | (0.54–3.30) | 0.716 |
Chr17:78326772 | C | T | 499 | 1 | 2429 | 1 | 4.87 | (0.30–77.95) | 0.312 |
Chr17:78350088 | T | C | 489 | 11 | 2392 | 38 | 1.42 | (0.72–2.79) | 0.312 |
Chr17:78353469 | T | C | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78354738 | G | A | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78355494 | C | G | 499 | 1 | 2429 | 1 | 4.87 | (0.30–77.95) | 0.312 |
Chr17:78356830 | G | T | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78357541 | A | T | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78360656 | C | T | 499 | 1 | 2429 | 1 | 4.87 | (0.30–77.95) | 0.312 |
Chr17:78362497 | C | T | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Chr17:78363181 | C | T | 499 | 1 | 2430 | 0 | – | – | 0.171 |
Total counts | 8958 | 42 | 43,623 | 117 | 1.74 | (1.23–2.49) | 0.002 |
*P values were calculated using a two-sided Fisher’s exact test
Ref Reference allele(s), Alt Alternate allele(s)
Case = 250 ICASO patients, Control = 1KG Chinese Han population and GeneSky Database(including 1007 healthy individuals)