. Author manuscript; available in PMC: 2019 Apr 1.

Published in final edited form as: Cell Rep. 2019 Mar 5;26(10):2622–2635.e5. doi: 10.1016/j.celrep.2019.02.025

KEY RESOURCES TABLE.

REAGENT or RESOURCE Software and Algorithms	SOURCE	IDENTIFIER
The R Project for Statistical Computing	R Development Core Team, 2018	https://www.R-project.org/
Bioconductor	Gentleman et al., 2004	https://www.bioconductor.org/
EdgeR	Robinson et al., 2010	R Bioconductor
TCGAbiolinks	Colaprico et al., 2016	R Bioconductor
MATLAB R2017b	The MathWorks, Inc.	https://ch.mathworks.com/products/matlab.html
MSigDB database	Subramanian et al., 2005	http://software.broadinstitute.org/gsea/msigdb