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. Author manuscript; available in PMC: 2019 Apr 1.
Published in final edited form as: ACS Chem Neurosci. 2018 Jan 12;9(5):1104–1117. doi: 10.1021/acschemneuro.7b00476

Table 1.

Summary of the Quadruplexes Considered in This Study

arrangement model name sequence strands form ion type
 parallel PQ 4 (GGGGCC) 4 DNA,RNA K+
PQ-Na 4 (GGGGCC) 4 DNA Na+
PQ-O 4 (GGGGCC) 4 DNA K+,outside
SCA36-PQ 4 (TGGGCC) 4 DNA,RNA(T→U) K+
 antiparallel AQ-1 2 (GGGGCC), 2 (CCGGGG) 4 DNA,RNA K+
AQ-1-Na 2 (GGGGCC), 2 (CCGGGG) 4 DNA Na+
AQ-1-O 2 (GGGGCC), 2 (CCGGGG) 4 DNA K+,outside
AQ-2 3 (GGGGCC), 1 (GGGG) 4 DNA,RNA K+
AQ-2-Na 3 (GGGGCC), 1 (GGGG) 4 DNA Na+
AQ-2-O 3 (GGGGCC), 1 (GGGG) 4 DNA K+,outside
AQ-1-L 2 (GGGGCCCCGGGG) 2 looped DNA,RNA K+
AQ-2-L (GGGGCC)3-GGGG 1 looped DNA,RNA K+
SCA36-AQ1 3 (TGGGCC), 1 (TGGGC) 4 DNA,RNA(T→U) K+
SCA36-AQ2 4 (TGGGCC) 4 DNA,RNA(T→U) K+