Table 3. STs observed and number of strains included in each ST.
STa | No. Strains | % | Human cases | Reported as EHECb | Known serotypes |
---|---|---|---|---|---|
655 | 38 | 13.67 | + | + | O121:H19 |
4496 | 12 | 4.32 | + | NR | O8:H28 |
2008 | 12 | 4.32 | + | NR | Ounk:H2/40 |
21 | 8 | 2.88 | + | + | O26:H11/- |
297 | 9 | 3.24 | + | - (UPEC, APEC) | diverse serotypes |
205 | 7 | 2.52 | + | - (UPEC) | NR |
43 | 5 | 1.80 | + | - (ETEC, EAEC) | O6:H10 |
154 | 5 | 1.80 | + | - (EPEC, APEC) | diverse serotypes |
173 | 5 | 1.80 | + | NR | O181:H49 |
295 | 5 | 1.80 | + | - (EAEC, UPEC, ExPEC) | diverse serotypes |
677 | 5 | 1.80 | + | + | diverse serotypes |
747 | 8 | 2.88 | + | - (ETEC) | diverse serotypes |
11 | 3 | 1.08 | + | + | O157:H7/- |
16 | 2 | 0.72 | + | + | O111:H8/2/- |
17 | 2 | 0.72 | + | + | O103:H2/- |
25 | 1 | 0.36 | + | + | O128:H2 |
29 | 1 | 0.36 | + | + (also EPEC) | O26:H11 |
32 | 1 | 0.36 | + | + | O145:H- |
33 | 2 | 0.72 | + | + | O91:H14 |
119 | 1 | 0.36 | + | + | O165:H25/28 |
223 | 4 | 1.44 | + | + (also UPEC, EAEC) | diverse serotypes |
306 | 2 | 0.72 | + | + | O84:H2/K+ |
329 | 2 | 0.72 | + | + (also EAEC) | diverse serotypes |
657 | 1 | 0.36 | + | + | diverse serotypes |
675 | 1 | 0.36 | + | + | O76:H19 |
679 | 3 | 1.08 | + | + | O163:H19 |
724 | 1 | 0.36 | + | + | O154/Ounk:H20 |
5299 | 2 | 0.72 | + | NR | O8:H49 |
325 | 1 | 0.36 | + | NR | O15:H16/K+ |
6639 | 1 | 0.36 | + | NR | O174:H21/36 |
661 | 2 | 0.72 | + | NR | O174:H2 |
662 | 2 | 0.72 | + | NR | diverse serotypes |
691 | 2 | 0.72 | + | NR | diverse serotypes |
692 | 3 | 1.08 | + | NR | O74:H42 |
718 | 3 | 1.08 | + | NR | O168:H8 |
723 | 4 | 1.44 | + | NR | O103:H11 |
942 | 1 | 0.36 | + | NR | O116:H28 |
955 | 1 | 0.36 | + | NR | O139:H1/6 |
993 | 2 | 0.72 | + | NR | O100:H30 |
1792 | 1 | 0.36 | + | NR | O111:H8 |
1817 | 1 | 0.36 | + | NR | O104:H7 |
1967 | 2 | 0.72 | + | NR | O103:H2 |
2388 | 1 | 0.36 | + | NR | O15 |
2520 | 3 | 1.08 | + | NR | O116:H49 |
3759 | 1 | 0.36 | + | NR | NR |
5973 | 2 | 0.72 | + | NR | Ounk:H2 |
6475 | 2 | 0.72 | + | NR | O17/077:H45 |
10 | 2 | 0.72 | + | - (mainly EAEC, UPEC, ETEC) | diverse serotypes |
35 | 1 | 0.36 | + | - (EPEC or UPEC) | O154:H4, O145:H34/31 |
40 | 1 | 0.36 | + | - (EAEC) | O111ac:H21 |
58 | 1 | 0.36 | + | - (EAEC, UPEC, ExPEC, APEC) | diverse serotypes |
88 | 2 | 0.72 | + | - (EAEC, UPEC, ExPEC, APEC) | diverse serotypes |
101 | 3 | 1.08 | + | - (EAEC, UPEC, ExPEC, APEC) | diverse serotypes |
156 | 1 | 0.36 | + | - (UPEC, EXPEC) | diverse serotypes |
162 | 1 | 0.36 | + | - (UPEC, APEC) | O8:H19 |
342 | 2 | 0.72 | + | - (EPEC) | O177:NM |
394 | 1 | 0.36 | + | - (EAEC, UPEC) | diverse serotypes |
398 | 1 | 0.36 | + | - (ExPEC) | diverse serotypes |
442 | 3 | 1.08 | + | - (EPEC) | O146:H21 |
443 | 2 | 0.72 | + | - (UPEC) | NR |
446 | 2 | 0.72 | + | - (APEC) | diverse serotypes |
515 | 1 | 0.36 | + | - (EAEC) | O2:H9 |
641 | 1 | 0.36 | + | - (ExPEC) | diverse serotypes |
642 | 3 | 1.08 | + | - (EPEC) | diverse serotypes |
706 | 1 | 0.36 | + | - (UPEC) | diverse serotypes |
906 | 3 | 1.08 | + | - (UPEC) | diverse serotypes |
1431 | 1 | 0.36 | + | - (ExPEC) | O8:H19/30 |
1727 | 4 | 1.44 | + | - (mostly nonpathogen) | diverse serotypes |
937 | 1 | 0.36 | + | - (ExPEC, non pathogen) | O43:H2 |
1385 | 1 | 0.36 | - | - (APEC) | Ounk:H4 |
1611 | 2 | 0.72 | - | - (APEC) | diverse serotypes |
5082 | 1 | 0.36 | - | NR | NR |
332 | 1 | 0.36 | - | NR | O171:H2 |
5395 | 1 | 0.36 | - | NR | O74:H8 |
5435 | 2 | 0.72 | - | NR | Ounk:H16 |
5530 | 1 | 0.36 | - | NR | Ounk:H21 |
5602 | 2 | 0.72 | - | NR | 36:H28 |
5960 | 1 | 0.36 | - | NR | NR |
5975 | 1 | 0.36 | - | NR | O113:H21 |
6509 | 1 | 0.36 | - | NR | O168:H8 |
6632 | 1 | 0.36 | - | NR | O8:H16 |
6638 | 1 | 0.36 | - | NR | Ounk:H19 |
3017 | 1 | 0.36 | - | NR | O116:H21 |
6640 | 1 | 0.36 | - | NR | O113:H21 |
6641 | 1 | 0.36 | - | NR | O130:H11 |
6642 | 1 | 0.36 | - | NR | O113:H21 |
1112 | 1 | 0.36 | - | - (nonpathogen) | diverse serotypes |
1176 | 1 | 0.36 | - | - (nonpathogen) | O36:H14 |
2161 | 1 | 0.36 | - | - (nonpathogen) | O180:H14 |
2217 | 4 | 1.44 | - | - (nonpathogen) | diverse serotypes |
2389 | 1 | 0.36 | - | - (nonpathogen) | NR |
1086 | 10 | 3.60 | - | - (nonpathogen) | diverse serotypes |
2385 | 7 | 2.52 | - | - (nonpathogen) | O8:H19 |
2387 | 8 | 2.88 | - | - (nonpathogen) | O185:H7 |
4173 | 2 | 0.72 | - | - (nonpathogen) | O79:H2 |
NR- not reported, UPEC (uropathogenic E. coli), EPEC (enteropathogenic E. coli), ETEC (Enterotoxigenic E. coli), APEC (Avian pathogenic E. coli), EAEC (Enteroaggregative E. coli) and ExPEC (Extraintestinal pathogenic E. coli).
a-Determined by in silico analysis of the WGS assemblies.
b-when negative, the reported E. coli type is stated.