Table 5. Presence of antimicrobial resistance genes identified by in silico analysis in the 276 STEC genomes analyzed in this study.
Strains | aadAa | aph3a | strAa | strBa | bla TEMb | mef(B)c | floRd | QnrBe | sul1f | sul2f | sul3f | tetAg | tetBg | tetCg | dfrAh |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CFSAN053338 | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - |
CFSAN046714i | - | - | - | - | - | - | - | - | + | - | + | - | - | + | - |
CFSAN051552 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046710 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046642 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
IEH-NGS-ECO-00231j | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - |
CFSAN053336 | - | + | + | + | - | - | - | - | - | + | - | + | - | - | - |
FDA00009425 | - | - | + | + | - | - | + | - | - | + | - | + | - | - | - |
FDA00011218 | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - |
IEH-NGS-ECO- | + | - | + | + | - | - | + | - | + | + | + | - | - | - | - |
CFSAN051526 | + | - | - | - | - | - | - | - | + | - | + | + | - | - | - |
CFSAN046636 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046669 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046668 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN053334 | - | - | + | + | - | - | + | - | - | + | - | + | - | - | - |
CFSAN046687 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN051521 | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - |
CFSAN046730 | - | + | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN041112 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN041111 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046671 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046708 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046685 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN046684 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN051527 | + | - | - | - | - | - | - | - | + | - | + | + | - | - | - |
CFSAN046686 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
CFSAN051535 | - | - | + | + | + | - | - | - | - | + | - | + | - | - | - |
CFSAN046693 | - | - | + | + | - | - | - | - | - | + | - | - | - | - | - |
CFSAN046713 | - | - | - | + | + | - | - | + | - | + | - | + | - | - | + |
CFSAN046725 | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - |
CFSAN051531 | - | - | - | + | - | - | - | - | - | + | - | + | - | - | + |
CFSAN051539k | + | + | - | - | + | + | - | - | - | - | + | - | + | - | - |
CFSAN041110 | - | - | + | + | - | - | - | - | - | + | - | - | + | - | - |
aAminoglycoside,
bBeta-lactamase,
cMacrolide,
dPhenicol,
eQuinolone,
fSulphonamide,
gTetracycline, and
h Trimethoprim.
i strain carrying blaOXAb gene.
j strain carrying blaCMY-2b gene.
k strain carrying cmld and cmlA1d genes.