Table 2.
Bacteriocins produced by Enterococcus mundtii QAUEM2808 Mundticin and enterolysin.
| Type | Protein ID | Area of Interest ID (Dawid et al., 2007) | AOI start position | Position of the gene in AOI | Strand | PI | Length | PFAM name | No of Cys and Thr | Lantibiotic PFAM domain | Blast hit in bacteriocin II database | Blast hit in bacteriocin III database/Homology (P-value) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sactipeptides | AOI1;orf006 | AOI_1 | 28,260 | 3,024–3,281 | + | 9.1 | 85 | Cys = 1 SerThr = 8 | primary_pfams | |||
| ClassIII | AOI2;orf015 | AOI_2 | 48,001 | 5,000–6,205 | + | 401 | PF13375.1 [4.3e-05] | enterolysin_A[9e-27] | ||||
| ClassII | AOI1;orf011 | AOI_1 | 1,942 | 5,000–5,176 | + | 10.3 | 58 | PF10439.4 [0.00021] | Cys = 2 SerThr = 7 | PF01721.13 PF10439.4 | Mundticin_ATO6 [1e-36] |
Protein ID means the bacteriocins ID present in the genome in the form of Open Reading Frame. AOI, Area Of Interest, the part of nucleotide sequence analyzed in more detail during identification of bacteriocin encoding genes; start position, ORF start position, position of gene; the bacteriocin start and endpoint in AOI. Link to access the results (http://www.genoscope.cns.fr/agc/microscope/metabolism/domainviewer.php?id=&prog=Cluster&ASC_id=36804).