Table 3.
Sample | Group | Total_bases | Tag_count | Tags/Kb |
---|---|---|---|---|
Control | CDS_Exons | 39,977,515 | 8,921,362 | 223.16 |
5’UTR_Exons | 3,002,257 | 602,843 | 200.8 | |
3’UTR_Exons | 13,709,583 | 2,927,376 | 213.53 | |
Introns | 817,405,745 | 163,673,356 | 200.24 | |
TSS_up_1kb | 27,119,038 | 3,934,857 | 145.1 | |
TSS_up_5kb | 123,811,475 | 18,469,306 | 149.17 | |
TSS_up_10kb | 226,283,650 | 33,787,938 | 149.32 | |
TES_down_1kb | 27,042,568 | 4,078,199 | 150.81 | |
TES_down_5kb | 118,479,240 | 17,748,831 | 149.81 | |
TES_down_10kb | 212,554,470 | 31,527,752 | 148.33 | |
AEG | CDS_Exons | 39,977,515 | 11,261,049 | 281.68 |
5’UTR_Exons | 3,002,257 | 562,354 | 187.31 | |
3’UTR_Exons | 13,709,583 | 2,853,633 | 208.15 | |
Introns | 817,405,745 | 167,349,858 | 204.73 | |
TSS_up_1kb | 27,119,038 | 4,018,422 | 148.18 | |
TSS_up_5kb | 123,811,475 | 19,016,199 | 153.59 | |
TSS_up_10kb | 226,283,650 | 34,838,221 | 153.96 | |
TES_down_1kb | 27,042,568 | 4,120,303 | 152.36 | |
TES_down_5kb | 118,479,240 | 18,083,259 | 152.63 | |
TES_down_10kb | 212,554,470 | 32,215,190 | 151.56 | |
Model | CDS_Exons | 39,977,515 | 12,861,620 | 321.72 |
5’UTR_Exons | 3,002,257 | 710,562 | 236.68 | |
3’UTR_Exons | 13,709,583 | 3,171,679 | 231.35 | |
Introns | 817,405,745 | 182,489,824 | 223.25 | |
TSS_up_1kb | 27,119,038 | 4,522,338 | 166.76 | |
TSS_up_5kb | 123,811,475 | 20,747,720 | 167.58 | |
TSS_up_10kb | 226,283,650 | 37,789,603 | 167 | |
TES_down_1kb | 27,042,568 | 4,517,278 | 167.04 | |
TES_down_5kb | 118,479,240 | 19,633,194 | 165.71 | |
TES_down_10kb | 212,554,470 | 34,863,583 | 164.02 |
Alcohol (AEG) extracts from G. lucidum by gavage.