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. 2019 Apr 1;20:164. doi: 10.1186/s12859-019-2748-y

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Integration of OncoTrack data into tranSMART: (1) Left panel: Overall data representation in the TranSMART data tree. Right panel: easy customized cohort building with drag-and-drop. (2) Cascaded querying with cohort linking/selection tool PatientMapper. (3) Generating summary statistics of a miRNA of choice by dragging the miRNA-Seq node to the right panel and providing miRNA ID using the HiDome plugin. (4) Performing miRNA-ome wide heatmap analysis between the two sub-cohorts (here responder vs. non-responder for a selected drug treatment) using SmartR workflows