Table 4.
Energy, Inhibition constant and Root mean square deviation values obtained on docking of AD and L-DOPA as ligand with AQP, SERT and TrkA protein
| Protein–ligand complex | Binding energy (kcal/mol) | RMSD (A) | Inhibition constant (Ki) | Final intermolecular energy (kcal/mol) | vdW + Hbond + desolv energy (kcal/mol) | Electrostatic energy (kcal/mol) | Total internal energy (kcal/mol) |
|---|---|---|---|---|---|---|---|
| AQP-AD | −8.88 | 147.416 | 307.80 nM | −12.46 | −12.47 | 0 | −4.92 |
| AQP- LDOPA | −5.13 | 153.213 | 173.91 uM | −7.22 | −4.68 | 2.54 | −2.59 |
| SERT-AD | −9.93 | 245.842 | 52.52 nM | −13.51 | −13.45 | −0.06 | −1.97 |
| SERT-LDOPA | 3.93 | 250.543 | 1.32 mM | −6.02 | −5.52 | −0.5 | −3.1 |
| TrkA-AD | 7.58 | 111.321 | 2.79 uM | −11.16 | −10.95 | −0.21 | −3.16 |
| TrkA-LDOPA | −6.0 | 115.214 | 39.97 uM | −8.09 | −6.57 | −1.52 | −2.8 |
AQP=Aquaporin, SERT=Serotonin transporter, TrKA=Tropomyosin receptor kinase, RMSD=Root mean square deviation