Table 3.
Genomic regions associated with NTE in LW, L, and D populations.
| topSNP | Gene/ | |||||
|---|---|---|---|---|---|---|
| # Significant | location | topSNP | nearest | |||
| Breed | SSC | Position (Mb) | SNPs | (Mb) | p-value | gene |
| Large white | 7 | 93.7–99.2 | 195 | 97.57 | 4.68e-75 | VRTN |
| 10 | 47.2–47.9 | 13 | 47.88 | 3.30e-12 | FRMD4A | |
| 12 | 50.4–50.6 | 23 | 50.60 | 4.02e-15 | SMTNL2 | |
| 15 | 134.8–134.9 | 11 | 134.80 | 3.27e-09 | ARL4C | |
| Landrace | 1 | 23.9–24.1 | 25 | 24.05 | 1.55e-13 | ANKS6 |
| 4 | 29.0–30.9 | 57 | 29.21 | 1.03e-13 | EIF3E | |
| 7 | 95.9–97.8 | 147 | 97.62 | 4.13e-51 | VRTN | |
| 12 | 50.3–52.6 | 64 | 50.36 | 6.11e-10 | UBE2G1 | |
| 15 | 134.62–134.64 | 2 | 134.64 | 6.59e-09 | ARL4C | |
| Duroc | 7 | 82.8–99.3 | 261 | 97.61 | 1.69e-59 | VRTN |
| 10 | 47.8–47.9 | 7 | 47.88 | 7.55e-09 | FRMD4A |
The QTL regions for NTE are presented with positions (build 11.1), number of significant SNPs (p-value < 1.0e-08), topSNP location and p-value, and the gene/nearest gene of the topSNP.