Table 2.
Probe/Gene Name and Accuracy (Acc%) of the Selected Genes/Probes for Raw Data and Preprocessed Data with RMA and MAS5
| raw | RMA | MAS5 | |||
|---|---|---|---|---|---|
| Probe/gene | Acc(%) | Probe/gene | Acc(%) | Probe/gene | Acc(%) |
| TUBB2A | 85.19 | TUBB2A | 88.89 | SOCS3 | 85.19 |
| HLA-DQA1 | 96.3 | C11orf1 | 88.89 | TMEM194A | 92.59 |
| TUBB2A | 92.59 | PPOX | 96.3 | 1561478_at | 92.59 |
| TUBB2A | 92.59 | TTC2 | 92.59 | CIB3 | 96.3 |
| TUBB2A | 88.89 | NRIP3 | 96.3 | ESYT2 | 92.59 |
| TUBB2A | 85.19 | SCAMP4 | 100 | ABHD1 | 92.59 |
| TUBB2A | 85.19 | HLA-DQA1 | 100 | JTB | 92.59 |
| HLA-DQA1 | 88.89 | 234253_at | 100 | 1556412_at | 92.59 |
| TUBB2A | 88.89 | 223313_s_at | 96.3 | 207371_at | 96.3 |
| TUBB2A | 88.89 | BTNL3 | 100 | LOC100131756 | 92.59 |
| BTNL3 | 88.89 | YSK4 | 96.3 | CDK6 | 92.59 |
| TUBB2A | 88.89 | 236963_at | 100 | ALS2CR8 | 96.3 |
| HLA-DQA1 | 92.59 | ZCCHC2 | 100 | SEL1L2 | 96.3 |
| TUBB2A | 88.89 | DSG3 | 100 | FLJ35220 | 96.3 |
| TUBB3 | 88.89 | TMEFF2 | 100 | 215626_at | 96.3 |
| HLA-DQB1 | 85.19 | 1566585_at | 100 | SPAM1 | 96.3 |
| HLA-DQB1_LOC101060835 | 85.19 | 231141_at | 100 | FTCD | 96.3 |
| HLA-DQA1 | 88.89 | SPATA20 | 100 | 1570285_at | 96.3 |
| IMMP1L | 85.19 | CSN1S2A | 100 | 216795_at | 96.3 |
| BTNL3 | 85.19 | RAB11FIP3 | 100 | MAP3K2 | 96.3 |
| _at | 85.19 | 239587_at | 100 | MTSS1L | 96.3 |
| ZFPL1 | 85.19 | RIMS3 | 100 | GMEB1 | 96.3 |
| GNRHR2 | 85.19 | 234548_at | 100 | SOCS7 | 96.3 |
| DR1 | 88.89 | C20orf103 | 100 | GNA12 | 96.3 |
| DOCK11 | 88.89 | AGR2 | 100 | 244274_at | 96.3 |
| HLA-DQB1 | 88.89 | SAT1 | 100 | PLP2 | 96.3 |
| FMR1 | 88.89 | RGS18 | 100 | ATG9B | 96.3 |
| ACAP2 | 85.19 | 1570044_at | 100 | 1564056_at | 96.3 |
| HLA-DQB1 | 85.19 | TUBB3 | 100 | PCCB | 96.3 |
| ZEB1_LOC100996668 | 85.19 | HDLBP | 100 | 239370_at | 96.3 |
| FLJ32790 | 85.19 | 560087_a_at | 100 | ANK1 | 96.3 |
| LOC100505812 | 88.89 | AVL9 | 100 | SCAND2 | 96.3 |
| DENND4C | 88.89 | 241238_at | 100 | 1564872_at | 96.3 |
| PREPL | 88.89 | PHLDB3 | 100 | SMAD2 | 96.3 |
| LOC100505812 | 85.19 | PIGK | 100 | CMTM3 | 96.3 |
| FAM63B | 88.89 | F11 | 100 | INSR | 96.3 |
| LYSMD3 | 85.19 | C1orf21 | 100 | PSG1 | 96.3 |
| RP11-727A23.11_OTTHUMG00000183952 | 85.19 | IL9 | 100 | 1560169_at | 96.3 |
| HIPK3 | 85.19 | 229733_s_at | 100 | MAP3K1 | 96.3 |
| POLR2J4 | 85.19 | 241776_at | 100 | KCNRG | 96.3 |
| PHF17 | 85.19 | WDR27 | 100 | DOCK7 | 96.3 |
| SP3 | 85.19 | D21S2091E | 100 | 1560995_s_at | 96.3 |
| MRGBP | 85.19 | 239632_at | 100 | WNT5A | 96.3 |
| NAP1L1 | 85.19 | HGSNAT | 100 | 1562673_at | 100 |
| FAM126A | 85.19 | 242839_at | 100 | GSK3B | 100 |
| EPS15P1 | 85.19 | KCTD4 | 100 | NCKIPSD | 100 |
| SMCR8 | 85.19 | MECOM | 100 | 215439_x_at | 100 |
| HLA-DQA1_LOC100509457 | 85.19 | LOC257152 | 100 | CDHR3 | 96.3 |
| ZMYM2 | 85.19 | MLH3 | 100 | PCGEM1 | 96.3 |
| EIF1AX_LOC101060318 | 85.19 | DDX60 | 100 | GNG13 | 96.3 |
Genes with the best accuracy are shown in boldface.