Table 2. General information and ancestral allele frequencies of 48 SNP loci in different continental populations.
| Rs numbers | Allelesa | Chromosomesa | Positions (bp)a | Africanb | Americanb | Europeanb | East Asianb |
|---|---|---|---|---|---|---|---|
| rs10918196 | C/T | 1 | 165478920 | 0.8351 | 0.3947 | 0.6108 | 0.2429 |
| rs2801178 | G/T | 1 | 14881716 | 0.8608 | 0.2368 | 0.7753 | 0.4774 |
| rs4652825 | A/G | 1 | 183824189 | 0.7320 | 0.4737 | 0.8101 | 0.6215 |
| rs10779958 | A/C | 2 | 74528651 | 0.3763 | 0.5000 | 0.8481 | 0.1921 |
| rs1161474 | C/T | 2 | 239209361 | 0.7320 | 0.6053 | 0.3829 | 0.5424 |
| rs7570426 | A/C | 2 | 3325638 | 0.5567 | 0.8947 | 0.9051 | 0.4915 |
| rs11716005 | C/T | 3 | 18394010 | 0.9742 | 0.9474 | 0.8101 | 0.5621 |
| rs301927 | A/G | 3 | 97627774 | 0.7423 | 0.8947 | 0.0918 | 0.6638 |
| rs4533619 | A/G | 3 | 42248320 | 0.2835 | 0.3246 | 0.1456 | 0.7345 |
| rs4894436 | G/T | 3 | 171401588 | 0.6649 | 0.0789 | 0.6551 | 0.0847 |
| rs6446081 | C/T | 3 | 59723035 | 0.8866 | 0.8070 | 0.7532 | 0.5480 |
| rs12650562 | C/T | 4 | 23799564 | 0.4897 | 0.7456 | 0.5032 | 0.5593 |
| rs3762894 | C/T | 4 | 99144933 | 0.7268 | 1.0000 | 0.8291 | 0.3757 |
| rs2400219 | C/T | 5 | 146472334 | 0.1546 | 0.2193 | 0.2057 | 0.7994 |
| rs277329 | A/C | 5 | 54158354 | 0.8351 | 0.8158 | 0.8133 | 0.3814 |
| rs35414 | C/T | 5 | 33969523 | 1.0000 | 0.8509 | 0.3956 | 0.8644 |
| rs4704322 | C/T | 5 | 76526649 | 0.9639 | 0.5175 | 0.7880 | 0.1299 |
| rs871722 | A/G | 5 | 17437385 | 0.8918 | 0.2368 | 0.1361 | 0.0876 |
| rs1857859 | A/G | 6 | 100446711 | 0.8557 | 0.4123 | 0.7025 | 0.5678 |
| rs4711760 | C/T | 6 | 44027931 | 0.7990 | 0.7018 | 0.3291 | 0.9379 |
| rs947612 | A/G | 6 | 73028938 | 0.8608 | 0.7018 | 0.2500 | 0.7655 |
| rs2373177 | C/T | 7 | 147717307 | 0.6031 | 0.6053 | 0.7152 | 0.7386 |
| rs4646437 | G/A | 7 | 99767460 | 0.8505 | 0.2456 | 0.1108 | 0.1243 |
| rs7795646 | A/G | 7 | 120683673 | 0.5773 | 0.7632 | 0.2057 | 0.4774 |
| rs2595599 | A/G | 8 | 92646120 | 0.4124 | 0.3947 | 0.7962 | 0.2542 |
| rs351554 | A/C | 8 | 16149886 | 0.7680 | 0.5439 | 0.1329 | 0.4972 |
| rs4738110 | A/C | 8 | 71193716 | 0.9588 | 0.3509 | 0.7342 | 0.3136 |
| rs10965206 | A/G | 9 | 229826 | 0.4845 | 0.5877 | 0.8766 | 0.5791 |
| rs4743923 | C/T | 9 | 93488779 | 0.0361 | 0.3333 | 0.4019 | 0.4096 |
| rs16917217 | A/G | 10 | 18370276 | 0.2938 | 0.2456 | 0.3513 | 0.6441 |
| rs4933165 | C/T | 10 | 89903145 | 0.8557 | 0.5439 | 0.8956 | 0.2147 |
| rs11218323 | C/T | 11 | 99080380 | 0.6856 | 0.8070 | 0.8734 | 0.5256 |
| rs1470253 | A/G | 11 | 20099911 | 0.7732 | 0.2018 | 0.7437 | 0.1384 |
| rs1032332 | T/C | 12 | 72568351 | 0.5825 | 0.2632 | 0.1361 | 0.5311 |
| rs17650122 | A/G | 13 | 29010756 | 0.5052 | 0.5877 | 0.5696 | 0.3220 |
| rs3782972 | C/T | 13 | 94450792 | 0.9330 | 0.2544 | 0.7468 | 0.3220 |
| rs7325443 | C/T | 13 | 111238209 | 0.7938 | 0.3246 | 0.8070 | 0.3079 |
| rs10148212 | A/C | 14 | 66628895 | 0.2917 | 0.5357 | 0.9209 | 0.5028 |
| rs10852189 | C/T | 15 | 93163645 | 0.5158 | 0.2281 | 0.3228 | 0.5141 |
| rs9806693 | A/G | 15 | 78892045 | 0.6495 | 0.5439 | 0.2437 | 0.6780 |
| rs170359 | A/G | 16 | 57361752 | 0.6649 | 0.3333 | 0.0316 | 0.1412 |
| rs7219900 | C/T | 17 | 15471179 | 0.7474 | 0.2105 | 0.1076 | 0.3475 |
| rs11152349 | A/G | 18 | 62566413 | 0.7062 | 0.6316 | 0.7057 | 0.3023 |
| rs528438 | T/C | 18 | 28093911 | 0.2165 | 0.7632 | 0.3038 | 0.8079 |
| rs1205357 | C/T | 20 | 34289960 | 0.8711 | 0.0088 | 0.1076 | 0.2147 |
| rs162315 | A/G | 20 | 57233824 | 0.2268 | 0.6667 | 0.7025 | 0.6864 |
| rs2178832 | G/A | 21 | 35449600 | 0.2010 | 0.4737 | 0.5443 | 0.2288 |
| rs361557 | A/G | 22 | 18128456 | 0.9330 | 0.7456 | 0.1835 | 0.5650 |
Notes.
Information of each SNP locus is shown according to the report of dbSNP build 152.
Ancestral allele frequencies of 48 SNPs in four continental populations are obtained based on the genetic data of 25 training populations in Table 1.