Skip to main content
. 2019 Mar 29;7:e6508. doi: 10.7717/peerj.6508

Table 2. General information and ancestral allele frequencies of 48 SNP loci in different continental populations.

Rs numbers Allelesa Chromosomesa Positions (bp)a Africanb Americanb Europeanb East Asianb
rs10918196 C/T 1 165478920 0.8351 0.3947 0.6108 0.2429
rs2801178 G/T 1 14881716 0.8608 0.2368 0.7753 0.4774
rs4652825 A/G 1 183824189 0.7320 0.4737 0.8101 0.6215
rs10779958 A/C 2 74528651 0.3763 0.5000 0.8481 0.1921
rs1161474 C/T 2 239209361 0.7320 0.6053 0.3829 0.5424
rs7570426 A/C 2 3325638 0.5567 0.8947 0.9051 0.4915
rs11716005 C/T 3 18394010 0.9742 0.9474 0.8101 0.5621
rs301927 A/G 3 97627774 0.7423 0.8947 0.0918 0.6638
rs4533619 A/G 3 42248320 0.2835 0.3246 0.1456 0.7345
rs4894436 G/T 3 171401588 0.6649 0.0789 0.6551 0.0847
rs6446081 C/T 3 59723035 0.8866 0.8070 0.7532 0.5480
rs12650562 C/T 4 23799564 0.4897 0.7456 0.5032 0.5593
rs3762894 C/T 4 99144933 0.7268 1.0000 0.8291 0.3757
rs2400219 C/T 5 146472334 0.1546 0.2193 0.2057 0.7994
rs277329 A/C 5 54158354 0.8351 0.8158 0.8133 0.3814
rs35414 C/T 5 33969523 1.0000 0.8509 0.3956 0.8644
rs4704322 C/T 5 76526649 0.9639 0.5175 0.7880 0.1299
rs871722 A/G 5 17437385 0.8918 0.2368 0.1361 0.0876
rs1857859 A/G 6 100446711 0.8557 0.4123 0.7025 0.5678
rs4711760 C/T 6 44027931 0.7990 0.7018 0.3291 0.9379
rs947612 A/G 6 73028938 0.8608 0.7018 0.2500 0.7655
rs2373177 C/T 7 147717307 0.6031 0.6053 0.7152 0.7386
rs4646437 G/A 7 99767460 0.8505 0.2456 0.1108 0.1243
rs7795646 A/G 7 120683673 0.5773 0.7632 0.2057 0.4774
rs2595599 A/G 8 92646120 0.4124 0.3947 0.7962 0.2542
rs351554 A/C 8 16149886 0.7680 0.5439 0.1329 0.4972
rs4738110 A/C 8 71193716 0.9588 0.3509 0.7342 0.3136
rs10965206 A/G 9 229826 0.4845 0.5877 0.8766 0.5791
rs4743923 C/T 9 93488779 0.0361 0.3333 0.4019 0.4096
rs16917217 A/G 10 18370276 0.2938 0.2456 0.3513 0.6441
rs4933165 C/T 10 89903145 0.8557 0.5439 0.8956 0.2147
rs11218323 C/T 11 99080380 0.6856 0.8070 0.8734 0.5256
rs1470253 A/G 11 20099911 0.7732 0.2018 0.7437 0.1384
rs1032332 T/C 12 72568351 0.5825 0.2632 0.1361 0.5311
rs17650122 A/G 13 29010756 0.5052 0.5877 0.5696 0.3220
rs3782972 C/T 13 94450792 0.9330 0.2544 0.7468 0.3220
rs7325443 C/T 13 111238209 0.7938 0.3246 0.8070 0.3079
rs10148212 A/C 14 66628895 0.2917 0.5357 0.9209 0.5028
rs10852189 C/T 15 93163645 0.5158 0.2281 0.3228 0.5141
rs9806693 A/G 15 78892045 0.6495 0.5439 0.2437 0.6780
rs170359 A/G 16 57361752 0.6649 0.3333 0.0316 0.1412
rs7219900 C/T 17 15471179 0.7474 0.2105 0.1076 0.3475
rs11152349 A/G 18 62566413 0.7062 0.6316 0.7057 0.3023
rs528438 T/C 18 28093911 0.2165 0.7632 0.3038 0.8079
rs1205357 C/T 20 34289960 0.8711 0.0088 0.1076 0.2147
rs162315 A/G 20 57233824 0.2268 0.6667 0.7025 0.6864
rs2178832 G/A 21 35449600 0.2010 0.4737 0.5443 0.2288
rs361557 A/G 22 18128456 0.9330 0.7456 0.1835 0.5650

Notes.

a

Information of each SNP locus is shown according to the report of dbSNP build 152.

b

Ancestral allele frequencies of 48 SNPs in four continental populations are obtained based on the genetic data of 25 training populations in Table 1.