Table 3.
The breakpoints of plasma samples. The breakpoints detected in the plasma samples.
| Sample | Chr | Position | Support | Element | Gene |
|---|---|---|---|---|---|
| B0074 | chr4 | 8977829 | 4 | intergenic | LOC650293/USP17L10 |
| B0074 | chr8 | 103211319 | 2 | downstream | RRM2B |
| B0074 | chr8 | 30611415 | 2 | intronic | UBXN8 |
| B0074 | chr8 | 103119207 | 2 | intronic | NCALD |
| B0074 | chr4 | 125111322 | 2 | intergenic | LINC01091/ANKRD50 |
| B0074 | chr4 | 65178643 | 2 | intronic | TECRL |
| B0074 | chr20 | 47656089 | 2 | promoter | CSE1L |
| B0068 | chr4 | 118968708 | 2 | intronic | NDST3 |
| B0068 | chr17 | 21903348 | 2 | promoter | FLJ36000 |
| B0064 | chr11 | 65986345 | 8 | intronic | PACS1 |
| B0064 | chr1 | 249121201 | 7 | promoter | SH3BP5L |
| B0064 | chr15 | 34708490 | 4 | intergenic | GOLGA8A |
| Sample | Chr | Position | Support | Element | Gene |
| B0061 | chr18 | 22570340 | 7 | intergenic | RP11-449D8.1/ZNF521 |
| B0061 | chr6 | 169471301 | 4 | intergenic | SMOC2/THBS2 |
| B0061 | chr3 | 110721179 | 4 | intergenic | LINC01205/PVRL3-AS1 |
| B0061 | chr7 | 74141512 | 3 | ncRNA_intronic | LOC101926943 |
| B0061 | chr21 | 39816650 | 3 | intronic | ERG |
| B0061 | chr4 | 86519608 | 2 | intronic | ARHGAP24 |
| B0061 | chr2 | 45757229 | 2 | intronic | SRBD1 |
| B0061 | chr1 | 225407594 | 2 | intronic | DNAH14 |
| B0061 | chr1 | 10649629 | 2 | intronic | PEX14 |
| B0049 | chr7 | 55273463 | 4 | UTR3 | EGFR |
| B0049 | chr4 | 92355373 | 3 | intronic | CCSER1 |
| B0049 | chr6 | 31003961 | 2 | downstream | MUC22 |
| B0049 | chr4 | 31901689 | 2 | intergenic | PCDH7 |
| B0049 | chr3 | 49089016 | 2 | intronic | QRICH1 |
| B0037 | chrX | 112015468 | 2 | downstream | AMOT |
| B0037 | chr2 | 28331047 | 2 | intronic | BRE |
| B0037 | chr17 | 33939459 | 2 | intronic | AP2B1 |
| B0037 | chr14 | 100715229 | 2 | intronic | YY1 |
| B0037 | chr10 | 57261124 | 2 | intergenic | PCDH15/MTRNR2L5 |
| B0037 | chr1 | 38451027 | 2 | intronic | SF3A3 |
| B0032 | chr17 | 21906061 | 4 | ncRNA_intronic | FLJ36000 |
| B0032 | chr17 | 21906355 | 3 | ncRNA_intronic | FLJ36000 |
| B0032 | chr11 | 191802 | 3 | promoter | LOC653486 |
| B0032 | chr4 | 49649534 | 2 | intergenic | CWH43 |
| B0032 | chr17 | 21903348 | 2 | promoter | FLJ36000 |
| B0075 | chr8 | 30611415 | 3 | intronic | UBXN8 |
| B0075 | chr5 | 7349039 | 3 | intergenic | LOC442132/ADCY2 |
| B0075 | chr3 | 73158614 | 3 | intergenic | PPP4R2/PDZRN3 |
| B0075 | chr8 | 124890891 | 2 | intronic | FER1L6 |
| B0075 | chr4 | 100009507 | 2 | intronic | ADH5 |
| B0075 | chr18 | 22570340 | 2 | intergenic | RP11-449D8.1/ZNF521 |
| B0075 | chr12 | 27136775 | 2 | intronic | TM7SF3 |
| B007 | chr10 | 89954886 | 6 | intergenic | PTEN/RNLS |
| B007 | chr10 | 89954930 | 4 | intergenic | PTEN/RNLS |
| B007 | chr11 | 47814540 | 3 | intronic | NUP160 |
| B007 | chr7 | 72974855 | 2 | promoter | BCL7B |
| B007 | chr18 | 42356727 | 2 | intronic | SETBP1 |
| Sample | Chr | Position | Support | Element | Gene |
| B0034 | chr12 | 30265504 | 5 | intergenic | TMTC1/IPO8 |
| B0034 | chr2 | 119052347 | 4 | intergenic | INSIG2/LOC101927709 |
| B0034 | chr15 | 67917548 | 4 | intronic | MAP2K5 |
| B0034 | chr12 | 33057564 | 3 | promoter | PKP2 |
| B0034 | chr9 | 98598152 | 2 | ncRNA_intronic | LINC00476 |
| B0034 | chr6 | 32546766 | 2 | UTR3 | HLA-DRB1 |
| B0034 | chr6 | 32546685 | 2 | UTR3 | HLA-DRB1 |
| B0034 | chr4 | 42527080 | 2 | intronic | ATP8A1 |
| B0021 | chr7 | 39673979 | 9 | intronic | RALA |
| B0021 | chr7 | 129485990 | 2 | intronic | UBE2H |
| B0021 | chr7 | 40234460 | 2 | intronic | SUGCT |
| B0021 | chr17 | 43211456 | 2 | intronic | ACBD4 |
| B0021 | chr17 | 43211378 | 2 | intronic | ACBD4 |
| B0012 | chr5 | 58123101 | 3 | intronic | RAB3C |
| B0012 | chr2 | 80380053 | 3 | intronic | CTNNA2 |
| B0012 | chr17 | 39084514 | 3 | exonic | KRT23 |
| B0012 | chr1 | 173786892 | 3 | intronic | CENPL |
| B0012 | chrX | 61684765 | 2 | intergenic | SPIN4 |
| B0012 | chr7 | 158778486 | 2 | intergenic | WDR60/LINC00689 |
| B0010 | chr4 | 184204577 | 3 | intronic | WWC2 |
| B0010 | chr3 | 69838919 | 3 | intronic | MITF |
| B0010 | chr17 | 7267199 | 3 | downstream | TMEM95 |
| B0010 | chr16 | 1723993 | 3 | exonic | CRAMP1L |
| B0010 | chr14 | 69887597 | 3 | intronic | SLC39A9 |
| B0010 | chr10 | 56134248 | 3 | intronic | PCDH15 |
| B0010 | chr1 | 111605674 | 3 | intergenic | LRIF1/DRAM2 |
| B0010 | chr9 | 20278555 | 2 | intergenic | SLC24A2/MLLT3 |
| B0010 | chr9 | 68429933 | 2 | ncRNA_intronic | LOC642236 |
| B0010 | chr9 | 6881037 | 2 | intronic | KDM4C |
| B0010 | chr8 | 88368708 | 2 | intronic | CNBD1 |
| B0010 | chr8 | 124052577 | 2 | intronic | DERL1 |
| B002 | chr5 | 52674905 | 2 | intergenic | LOC257396/FST |
| B002 | chr3 | 42691176 | 2 | promoter | ZBTB47 |
| B002 | chr12 | 38638139 | 4 | intergenic | ALG10B |
| B002 | chr2 | 28693259 | 2 | intergenic | FOSL2/PLB1 |
| B001 | chr2 | 219543519 | 2 | intronic | STK36 |
| B001 | chr2 | 219543501 | 4 | intronic | STK36 |
| B001 | chr18 | 11550976 | 11 | intergenic | PIEZO2/SLC35G4 |