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. 2019 Jan 29;179(4):1315–1329. doi: 10.1104/pp.18.01020

Table 1. Statistical overrepresentation test for up-regulated genes in crwn mutants.

Input GO Terms (Biological Process Complete) Total No. of Arabidopsis Genes in the Term Input Genes No. Expected No. of Genes Fold Enrichment P
Up-regulated genes in crwn1 mutants (444 genes mapped) Response (rsp.) to chitin 108 19 1.76 10.76 1.19E-10
Rsp. to jasmonic acid 174 18 2.84 6.33 2.68E-06
Rsp. to wounding 179 17 2.93 5.81 2.66E-05
Ethylene-activated signaling pathway 135 11 2.21 4.99 4.08E-02
Rsp. to SA 164 13 2.68 4.85 9.72E-03
Rsp. to abscisic acid 413 25 6.75 3.70 8.24E-05
Rsp. to salt stress 417 24 6.81 3.52 3.82E-04
Protein phosphorylation 828 47 13.53 3.47 6.30E-10
Rsp. to bacteria (bac.) 353 20 5.77 3.47 5.12E-03
Cellular rsp. to acid chemical 346 19 5.65 3.36 1.41E-02
Up-regulated genes in crwn2 mutants (107 genes mapped) Rsp. to organonitrogen compound 133 6 0.52 11.53 3.42E-02
Rsp. to cold 281 9 1.1 8.19 4.02E-03
Rsp. to salt stress 417 10 1.63 6.13 1.35E-02
Rsp. to acid chemical 896 21 3.51 5.99 9.39E-08
Rsp. to oxygen-containing compound 1,156 22 4.52 4.86 1.51E-06
Rsp. to inorganic substance 690 12 2.7 4.45 3.88E-02
Rsp. to hormone 1,218 18 4.76 3.78 2.65E-03
Up-regulated genes in crwn4 mutants (1,510 genes mapped) Rsp. to chitin 108 57 5.98 9.53 1.22E-32
Rsp. to molecule of bac. origin 20 8 1.11 7.22 4.54E-02
Defense rsp. to fungus, incompatible interaction 37 14 2.05 6.83 8.20E-05
Defense rsp. to bac., incompatible interaction 40 11 2.22 4.96 4.48E-02
Rsp. to wounding 179 46 9.91 4.64 1.09E-13
Plant-type hypersensitive rsp. 67 17 3.71 4.58 8.54E-04
Rsp. to SA 164 39 9.08 4.29 2.75E-10
Protein autophosphorylation 115 27 6.37 4.24 1.98E-06
Cellular rsp. to jasmonic acid stimulus 61 14 3.38 4.14 2.67E-02
Ethylene-activated signaling pathway 135 29 7.48 3.88 3.47E-06
Up-regulated genes in crwn1 crwn2 mutants (1,686 genes mapped) Rsp. to chitin 108 62 6.68 9.27 5.61E-35
Rsp. to molecule of bac. origin 20 9 1.24 7.27 1.33E-02
SA-mediated signaling pathway 35 14 2.17 6.46 1.61E-04
Defense rsp. to bac., incompatible interaction 40 15 2.48 6.06 1.27E-04
Plant-type hypersensitive rsp. 67 24 4.15 5.79 3.97E-08
Systemic acquired resistance 44 15 2.72 5.51 4.24E-04
Regulation of cell death 58 16 3.59 4.46 2.64E-03
Regulation of rsp. to biotic stimulus 49 13 3.03 4.29 3.82E-02
Regulation of rsp. to external stimulus 53 14 3.28 4.27 1.94E-02
Positive regulation of defense rsp. 64 16 3.96 4.04 9.07E-03
Up-regulated genes in crwn1 crwn4 mutants (382 genes mapped) Toxin metabolic process 54 8 0.76 10.53 2.89E-03
Cellular rsp. to SA stimulus 50 7 0.7 9.95 1.91E-02
Defense rsp. to bac. 281 29 3.96 7.33 5.01E-13
Rsp. to organonitrogen compound 133 13 1.87 6.94 1.85E-04
Innate immune rsp. 239 16 3.36 4.76 9.87E-04
Secondary metabolite biosynthetic process 256 14 3.6 3.89 4.85E-02
Rsp. to abscisic acid 413 22 5.81 3.78 3.62E-04
Rsp. to fungus 490 26 6.9 3.77 2.90E-05
Rsp. to oxidative stress 364 17 5.12 3.32 4.89E-02
Protein phosphorylation 828 29 11.65 2.49 1.97E-02