REAGENT or RESOURCE	SOURCE	IDENTIFIER
Chemicals, Peptides, and Recombinant Proteins
ZD7288	Tocris	Cat#1000; CAS: 13305
20XSSC	Sigma Aldrich	Cat#S6639
SDS	Sigma Aldrich	Cat#L3771
Boric acid	Sigma Aldrich	Cat#B6768
TE pH 8	Sigma Aldrich	Cat#8890-OP
Formamide	Sigma Aldrich	Cat#F9037
Dextran Sulfate	Sigma Aldrich	Cat#D8906
BSA	Ambion	Cat#AM2616
Ribonucleoside vanadyl complex	New England Biolabs	Cat#S1402S
Trna	Sigma Aldrich	Cat#10109541001
DAPI	Sigma Aldrich	Cat#32670
Glucose Oxidase	Sigma Aldrich	Cat#G2133
Catalase	Sigma Aldrich	Cat#C3515
Deposited Data
Allen Cell Types Database	Allen Institute for Brain Science	http://celltypes.brain-map.org/
Allen Brain Atlas	Allen Institute for Brain Science	http://human.brain-map.org; http://mouse.brain-map.org/
Experimental Models: Organisms/Strains
Mouse: C57BL/6- Tg(Pvalb- tdTomato)15Gfng/ J	The Jackson Laboratory	JAX:027395
Mouse: Gad2- IRES-Cre	The Jackson Laboratory	JAX:010802
Mouse: Ndnf- IRES-Cre	The Jackson Laboratory	JAX:028536
Mouse: Slc32a- IRES-Cre	The Jackson Laboratory	JAX:028862
Vip-IRES-Cre	The Jackson Laboratory	JAX:010908
Slc17a6-IRES-Cre	The Jackson Laboratory	JAX:016963
Chat_IRES-Cre-Neo	The Jackson Laboratory	JAX:006410
Sst-IRES-Cre	The Jackson Laboratory	JAX:013044
Oligonucleotides
Probes for mFISH, See Table S2	This paper	N/A
Software and Algorithms
Igor Pro	Wavemetrics	RRID:SCR_000325;https://www.wavemetrics.com/products/igorpro
GraphPad Prism	GraphPad	RRID:SCR_002798; https://www.graphpad.com/
NeuroMatic	NeuroMatic	RRID:SCR_03577; http://www.neuromatic.thinkrandom.com/
Vaa3d	Allen Institute for Brain Science	RRID:SCR_002609; http://www.alleninstitute.org/what-we-do/brain-science/research/products-tools/vaa3d/
Neuron 7.4	Github	RRID:SCR_005984) https://github.com/AllenInstitute/bmtk
DEAP library	Github	https://github.com/DEAP/deapAcq4.org
ACQ4	Acq4.org
Micromanager	Micromanager.org	RRID:SCR_000415; Micromanager.org
FIJI	GPL v2, Fiji	http://fiji.sc/Fiji
PCIamp 10	Molecular Devices	RRID: SCR_011323; Moleculardevices.com/products/software/pclamp.html