Treatment of alkali-burned limbus with collagenase restores expression of limbal markers in vivo. a Representative images of chemically burned rabbit corneas (alkali) and of alkali-burned corneas receiving collagenase treatment (treated), before (baseline) and after burn (day 0), as well as at day 2 and 7 post-burn. The haze resulting from the burn was delimited (traced line), and analysed for recovery (insets), and covered area (b) at day 0 (initial wound), 2 (dark blue) and 7 (light blue bars). Values corresponded to haze area average ± S.D. from three independent experiments (n = 3). c Representative confocal immunofluorescence micrographs (3D reconstruction) of chemically burned (alkali) and collagenase-treated burned limbus (treated) at day 7, with (d) corresponding marker expression quantification. Cell nuclei were detected using DAPI. Epithelial cells repopulating the alkali-burned limbus in vivo expressed significantly lower levels of limbal markers CK15, ΔNp63, ABCG2, and integrin-α9 while showing higher expression of the CK3 differentiation marker compared to the undamaged limbus (control) tissue. However, collagenase treatment successfully restored the ability of the burned limbus to support cells as in control tissues. e The expression of the mechanotransduction marker YAP was also significantly lower in the ΔNp63-positive, CK3-negative cells on treated and control limbus tissues, where it predominantly presented a non-nuclear, inactive form. In contrast, CK3-positive, ΔNp63-negative cells on the alkali-burned tissues showed significantly higher, and mostly nuclear, YAP expression. The expression of markers in d, e was represented as average ± S.D. from three independent experiments (n = 3; *, **, and *** corresponds to p < 0.05, 0.01, and 0.001 after one-way ANOVA, respectively). Source data are provided as a Source Data file. Scale bars, 50 µm