Table 1.
HSF ID | Phytozome | HSF | Location | Strand | Length | pI | GRAVY | Mw (kD) | Subcel loc and no. NN | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
locus | group | Chr* | Start* | End* | Gene | CDS | Protein | ||||||
LushsfA1a | Lus10011065 | A1a | Lu08 | 18101211 | 18103152 | reverse | 1941 | 1377 | 458 | 4.82 | −0.578 | 50.06 | nu: 14 |
LushsfA1b | Lus10040911 | A1b | Lu15 | 8448889 | 8450468 | forward | 1579 | 1377 | 458 | 5.65 | −0.583 | 50.64 | nu: 14 |
LushsfA1c | Lus10000312 | A1c | Lu08 | 16643985 | 16645926 | reverse | 1941 | 1377 | 458 | 4.95 | −0.602 | 50.01 | nu: 14 |
LushsfA1d | Lus10030956 | A1d | Lu09 | 5719143 | 5722728 | reverse | 3585 | 1416 | 471 | 4.90 | −0.778 | 52.43 | nu: 14 |
LushsfA1f | Lus10040091 | A1f | Lu07 | 4032070 | 4035485 | forward | 3415 | 1416 | 471 | 4.72 | −0.770 | 52.11 | nu: 14 |
LushsfA2a | Lus10013797 | A2a | Lu11 | 2671577 | 2672762 | reverse | 1185 | 1026 | 341 | 5.01 | −0.682 | 38.43 | nu: 14 |
LushsfA2b | Lus10039134 | A2b | Lu14 | 18116147 | 18117412 | forward | 1265 | 1110 | 369 | 5.22 | −0.649 | 41.46 | nu: 13, cp: 1 |
LushsfA3a | Lus10023866 | A3a | Lu08 | 4723718 | 4725601 | forward | 1883 | 1326 | 441 | 4.73 | −0.570 | 49.81 | nu: 14 |
LushsfA3b | Lus10014369 | A3b | Lu06 | 14835072 | 14836968 | forward | 1896 | 1341 | 446 | 4.71 | −0.561 | 50.31 | nu: 14 |
LushsfA4a | Lus10007318 | A4a | Lu15 | 2083596 | 2084949 | reverse | 1353 | 1242 | 413 | 4.97 | −0.648 | 46.38 | nu: 14 |
LushsfA4b | Lus10015237 | A4b | Lu12 | 2940951 | 2942258 | reverse | 1307 | 1212 | 403 | 5.75 | −0.880 | 45.68 | nu: 14 |
LushsfA4c | Lus10029269 | A4c | Lu03 | 8165193 | 8166105 | reverse | 912 | 801 | 266 | 6.01 | −0.623 | 30.58 | nu: 13, cp: 1 |
LushsfA4d | Lus10005420 | A4d | Lu07 | 17858515 | 17860349 | forward | 1834 | 1473 | 490 | 7.92 | −0.602 | 55.15 | nu: 5, cp: 1, cy: 2, mt: 2, vac: 2, er: 1, gb:1 |
LushsfA6a | Lus10006618 | A6a | Lu08 | 22068530 | 22070272 | forward | 1742 | 1185 | 394 | 5.56 | −0.734 | 44.47 | nu: 14 |
LushsfA6b | Lus10039376 | A6b | Lu10 | 3252307 | 3253927 | forward | 1620 | 1122 | 373 | 5.11 | −0.650 | 42.35 | nu: 13, cp: 1 |
LushsfA7a | Lus10000492 | A7a | Lu14 | 4577433 | 4578881 | forward | 1448 | 1125 | 374 | 5.52 | −0.737 | 42.24 | nu: 13 |
LushsfA7b | Lus10014698 | A7b | Lu01 | 26411220 | 26412688 | reverse | 1468 | 1137 | 378 | 5.51 | −0.780 | 42.96 | nu: 14 |
LushsfA7c | Lus10022083 | A7c | unmapped | - | - | reverse | 1410 | 1131 | 376 | 5.75 | −0.744 | 43.11 | nu: 14 |
LushsfA8a | Lus10003707 | A8a | Lu03 | 4843561 | 4845792 | reverse | 2231 | 1122 | 373 | 4.97 | −0.703 | 42.42 | nu: 13, per: 1 |
LushsfA8b | Lus10001591 | A8b | Lu04 | 8648138 | 8650354 | reverse | 2216 | 1122 | 373 | 4.78 | −0.724 | 42.72 | nu: 13, per: 1 |
LushsfA9a | Lus10027627 | A9a | Lu11 | 14143005 | 14144526 | forward | 1521 | 1422 | 473 | 5.03 | −0.697 | 53.45 | nu: 14 |
LushsfA9b | Lus10011941 | A9b | Lu10 | 7901682 | 7903160 | reverse | 1478 | 1377 | 458 | 5.19 | −0.696 | 51.76 | nu: 14 |
LushsfB1a | Lus10019348 | B1a | Lu02 | 1244140 | 1247030 | forward | 2890 | 273 | 822 | 4.81 | −0.995 | 30.15 | nu: 14 |
LushsfB1c | Lus10009351 | B1c | Lu13 | 5055375 | 5058490 | forward | 3115 | 852 | 283 | 4.84 | −0.991 | 31.44 | nu: 11, cp: 1, cy: 1, pm: 1 |
LushsfB2a | Lus10014994 | B2a | Lu14 | 19043189 | 19044240 | forward | 1051 | 924 | 307 | 5.58 | −0.694 | 33.51 | nu: 14 |
LushsfB2b | Lus10008007 | B2b | Lu07 | 6384378 | 6385552 | reverse | 1174 | 1098 | 365 | 4.80 | −0.554 | 39.28 | nu: 13, per: 1 |
LushsfB2d | Lus10024508 | B2d | Lu09 | 7452072 | 7454461 | reverse | 2389 | 1227 | 408 | 5.27 | −0.499 | 44.34 | nu: 13, per: 1 |
LushsfB4a | Lus10042646 | B4a | Lu09 | 17698210 | 17699546 | reverse | 1336 | 1233 | 410 | 8.25 | −0.656 | 45.07 | nu: 14 |
LushsfB4b | Lus10036062 | B4b | Lu01 | 503457 | 505257 | reverse | 1800 | 951 | 316 | 6.21 | −0.899 | 36.54 | nu: 14 |
LushsfB4c | Lus10001133 | B4c | Lu10 | 13207020 | 13208344 | reverse | 1324 | 1215 | 404 | 7.84 | −0.704 | 44.83 | nu: 14 |
LushsfB5a | Lus10011185 | B5a | Lu15 | 837963 | 839813 | forward | 1850 | 615 | 204 | 9.32 | −0.812 | 23.78 | nu: 13.5, cy_nu: 0.5 |
LushsfB5b | Lus10018488 | B5b | Lu08 | 23772105 | 23774084 | reverse | 1979 | 603 | 200 | 9.27 | −0.668 | 23.19 | nu: 12.5, cy_nu: 7, cp 1 |
LushsfC1a | Lus10023636 | C1a | Lu11 | 15833912 | 15834932 | forward | 1020 | 921 | 306 | 7.78 | −0.715 | 34.63 | nu: 14 |
LushsfC1b | Lus10034907 | C1b | Lu12 | 8134272 | 8135285 | forward | 1013 | 924 | 307 | 6.98 | −0.695 | 34.46 | nu: 14 |
Chromosomal location estimated as per You et al.10.
pI: isoelectric point, GRAVY: Grand average of hydropathicity, Mw(kD): Molecular weight in kilo Dalton, Subcel loc and no. NN: Subcellular location and number of nearest neighbours, nu: nucleus, mt: mitochondria, cp: chloroplast, per: peroxisome, cy: cytosol, vac: vacuole, ER: endoplasmic reticulum, gb: golgi body, cy_nu: dual localization cytosol and nucleus, pm: plasma membrane.