Table 3:
Anchoring of the M. zebra assembly with four different genetic linkage maps. The FALCON assembly was anchored to each map separately, and the total bases anchored are shown for each LG and map. The anchored map LGs that were used for the M_zebra_UMD2 anchoring are indicated in boldface. The L. fuelleborni×T. “red cheek” map had four LGs that were combined into two (LG10a/LG10b and LG13a/LG13b). Selection of particular LGs for the final anchoring is based on accuracy and not necessarily overall length. The total lengths including unanchored contigs differ slightly because the number of gaps (100 bp) inserted were different for each anchoring
| LG | M. zebra×M. mbenjii (160 F2) | L. fuelleborni×T. “red cheek” (262 F2) | M. mbenjii×A. koningsi (331 F2) | M. mbenjii×A. baenschi (161 F2) | M_zebra_UMD2 |
|---|---|---|---|---|---|
| LG1 | 31,191,433 | 32,150,205 | 38,662,702 | 36,192,366 | 38,662,702 |
| LG2 | 25,783,542 | 28,952,651 | 32,647,892 | 33,362,328 | 32,647,892 |
| LG3 | 18,498,838 | 14,707,016 | 37,717,145 | 24,847,713 | 37,309,556 |
| LG4 | 28,418,370 | 24,424,243 | 29,889,472 | 23,743,562 | 30,507,480 |
| LG5 | 29,725,229 | 34,008,850 | 36,154,892 | 30,984,548 | 36,154,892 |
| LG6 | 15,868,181 | 32,717,361 | 39,879,506 | 32,438,073 | 39,760,669 |
| LG7 | 29,333,014 | 57,016,972 | 64,381,187 | 50,973,986 | 64,889,811 |
| LG8 | 19,307,854 | 16,999,744 | 24,280,574 | 18,082,738 | 23,959,896 |
| LG9 | 21,018,370 | 22,620,859 | 18,771,712 | 24,011,483 | 21,018,370 |
| LG10 | 25,942,318 | 26,176,893 | 32,583,833 | 25,149,136 | 32,346,187 |
| LG11 | 32,253,887 | 30,903,800 | 34,404,464 | 31,577,152 | 32,434,411 |
| LG12 | 23,231,402 | 31,401,442 | 34,043,602 | 31,595,605 | 34,077,077 |
| LG13 | 25,893,161 | 24,034,634 | 31,886,878 | 28,831,406 | 32,061,881 |
| LG14 | 32,750,971 | 32,025,991 | 37,909,455 | 30,978,148 | 37,855,742 |
| LG15 | 28,015,059 | 28,462,857 | 34,537,245 | 28,405,563 | 34,537,245 |
| LG16 | 24,665,172 | 26,935,058 | 34,727,877 | 29,158,962 | 34,727,877 |
| LG17 | 28,473,329 | 31,631,813 | 35,766,785 | 31,607,415 | 35,766,785 |
| LG18 | 19,927,984 | 23,757,304 | 29,457,134 | 30,047,761 | 29,494,144 |
| LG19 | 24,076,222 | 19,992,035 | 25,739,093 | 22,726,673 | 25,955,740 |
| LG20 | 28,281,247 | 30,800,769 | 24,975,175 | 29,774,176 | 29,774,176 |
| LG22 | 27,460,019 | 31,372,369 | 34,717,234 | 30,512,954 | 34,717,234 |
| LG23 | 27,069,552 | 27,967,022 | 42,736,004 | 37,848,175 | 42,076,657 |
| Total anchored (%) | 567,185,154 (59.3%) | 629,059,888 (65.7%) | 755,869,861 (79.0%) | 662,849,923 (69.3%) | 760,736,424 (79.5%) |
| Total including unanchored | 957,158,042 | 957,163,242 | 957,185,442 | 957,167,042 | 957,200,631 |