Table 2.
Copy number estimate for divergent SF1 HORs.
| HOR name | Total monomers | Corrected total |
|---|---|---|
| S1C10/12H1d.1 | 358 | 259 |
| S1C10/12H1d.2 | 288 | 288 |
| S1C3H3d.1 | 251 | 248 |
| S1C3H3d.2 | 237 | 230 |
| S1C3H3d.3 | 318 | 310 |
| S1C3H3d.4 | 247 | 243 |
| S1C3H3d.5 | 259 | 239 |
| S1C12H3d.1 | 8 | 8 |
| S1C12H3d.2 | 9 | 9 |
| S1C12H3d.3 | 11 | 10 |
| S1C12H3d.4 | 50 | 36 |
| S1C12H3d.5 | 38 | 37 |
| S1C12H3d.6 | 11 | 11 |
| S1C12H3d.7 | 11 | 11 |
| S1C12H3d.8 | 14 | 14 |
| S1CMH1d.1 | 395 | 382 |
| S1CMH1d.2 | 512 | 505 |
| S1CMH1d.3 | 366 | 356 |
| S1CMH1d.4 | 228 | 226 |
| Total | 3611 | 3422 |
The total number of copies of each monomer in each divergent SF1 HOR was calculated from the HOR-track using the Table Browser. It was corrected by subtracting the number of falsely recognized monomers calculated as the sum of the monomers of a given HOR which were SF2 (total of 8), SF3 (total of 1) or SF4+ (total of 180) according to PERCON (the SF track). It was not possible to correct for the false recognition of SF5 monomers as all SF1 divergent HORs except for S1C10/12H1 were archaic and PERCON recognized archaic SF1 as SF1/SF5 mix [1]. S1C10/12H1 was not significantly involved in false SF5 coverage (the total of false SF5 hits was 1).