Table I.
Summary of pyrosequencing data.
| Sample_ID | Sequence_no. | OTUs | Filtered OTUs | Shannon_index | ACE_index | Chao1_index | Coverage | Simpon |
|---|---|---|---|---|---|---|---|---|
| RM_control1 | 34948 | 447 | 37322 | 1.2204 | 641.11437 | 580.913043 | 0.994964 | 0.56009 |
| RM_control2 | 39002 | 463 | 41410 | 0.421023 | 1672.661269 | 971.683544 | 0.992718 | 0.905217 |
| RM_control3 | 36163 | 551 | 38664 | 0.883533 | 885.603703 | 787.014925 | 0.993032 | 0.717632 |
| RM_control4 | 38540 | 336 | 39876 | 0.384966 | 448.529403 | 407.90625 | 0.996938 | 0.919171 |
| RM_control5 | 33366 | 637 | 35693 | 1.586938 | 874.401789 | 812.506329 | 0.992927 | 0.478691 |
| RM_control6 | 38787 | 377 | 39998 | 1.193842 | 691.127976 | 618.325 | 0.994921 | 0.460157 |
| RM_control7 | 33174 | 421 | 34615 | 1.90784 | 639.519629 | 559.125 | 0.994876 | 0.282237 |
| RM_control8 | 38476 | 604 | 40815 | 0.605582 | 1702.873689 | 1098.161017 | 0.991111 | 0.872647 |
| RM_control9 | 38193 | 418 | 40387 | 0.349364 | 1476.004523 | 827.296296 | 0.993245 | 0.927695 |
| RM_control10 | 39055 | 556 | 41136 | 0.430429 | 1525.391993 | 1033.097087 | 0.99196 | 0.913746 |
| RM_case1 | 38861 | 530 | 40899 | 0.47373 | 1411.786593 | 889.486486 | 0.992718 | 0.901358 |
| RM_case2 | 37973 | 495 | 39464 | 0.969683 | 688.77094 | 613.106383 | 0.995181 | 0.737364 |
| RM_case3 | 32766 | 659 | 34398 | 2.121407 | 1435.948065 | 1057.649635 | 0.989898 | 0.263954 |
| RM_case4 | 38107 | 633 | 40429 | 0.559294 | 1226.25393 | 1100.12782 | 0.990737 | 0.882253 |
| RM_case5 | 36180 | 553 | 37780 | 0.964259 | 1496.239405 | 983 | 0.99168 | 0.62994 |
| RM_case6 | 39523 | 692 | 42178 | 0.492288 | 1817.054442 | 1243.338129 | 0.990082 | 0.904096 |
| RM_case7 | 34778 | 478 | 36739 | 1.20537 | 766.093643 | 675.280992 | 0.993703 | 0.446528 |
| RM_case8 | 39885 | 510 | 41821 | 0.325184 | 1492.01625 | 904.345794 | 0.992704 | 0.94037 |
| RM_case9 | 39854 | 537 | 41768 | 0.576914 | 1407.226829 | 936.794393 | 0.992648 | 0.866492 |
| RM_case10 | 38340 | 609 | 41200 | 0.486695 | 1252.493401 | 1152.128205 | 0.990689 | 0.900224 |
The OTU, Chao I, Shannon and Simpon data were calculated at a 3% distance. RM_case, disease group; RM control, control group; OTUs, operational taxonomic units; ACE, abundance-based coverage estimators.