Table 3.
Characteristics of genetic linkage map and anchoring scaffolds of channel catfish.
LG_ID | Length of anchored scaffolds (Mb) | No. of anchored genes | No. of anchored scaffolds | No. of SNPs | Distance (cM) | Average inter-loci distance (cM) |
---|---|---|---|---|---|---|
LG1 | 32.97 | 939 | 22 | 308 | 109.18 | 0.35 |
LG2 | 11.3 | 300 | 3 | 67 | 60.85 | 0.91 |
LG3 | 25.4 | 643 | 6 | 138 | 29.01 | 0.21 |
LG4 | 16.9 | 501 | 5 | 186 | 77.46 | 0.42 |
LG5 | 22.99 | 647 | 7 | 153 | 101.21 | 0.66 |
LG6 | 22.73 | 595 | 11 | 183 | 96.57 | 0.52 |
LG7 | 25.49 | 714 | 11 | 144 | 76.81 | 0.53 |
LG8 | 24.2 | 661 | 4 | 156 | 88.71 | 0.56 |
LG9 | 31.5 | 783 | 12 | 175 | 100.47 | 0.57 |
LG10 | 33.31 | 743 | 7 | 205 | 99.39 | 0.48 |
LG11 | 18.72 | 408 | 5 | 143 | 73.32 | 0.51 |
LG12 | 22.8 | 622 | 10 | 419 | 111.54 | 0.27 |
LG13 | 40.9 | 961 | 10 | 200 | 66.76 | 0.33 |
LG14 | 36.44 | 905 | 9 | 171 | 49.21 | 0.28 |
LG15 | 18.73 | 411 | 11 | 143 | 70.69 | 0.49 |
LG16 | 7.23 | 215 | 1 | 166 | 94.6 | 0.56 |
LG17 | 30.04 | 655 | 10 | 181 | 78 | 0.43 |
LG18 | 32.68 | 864 | 9 | 155 | 110.03 | 0.7 |
LG19 | 28.52 | 837 | 4 | 120 | 99.71 | 0.83 |
LG20 | 22.94 | 649 | 12 | 141 | 78.59 | 0.55 |
LG21 | 14.47 | 438 | 2 | 111 | 69.52 | 0.62 |
LG22 | 32.78 | 618 | 6 | 318 | 141.1 | 0.44 |
LG23 | 16.91 | 402 | 3 | 63 | 23.23 | 0.36 |
LG24 | 33.41 | 790 | 7 | 152 | 136.71 | 0.89 |
LG25 | 17.44 | 475 | 8 | 136 | 112.19 | 0.82 |
LG26 | 23.50 | 614 | 5 | 125 | 125.9 | 1.01 |
LG27 | 8.43 | 189 | 5 | 62 | 28.71 | 0.46 |
LG28 | 22.67 | 788 | 8 | 116 | 75.76 | 0.65 |
LG29 | 29.17 | 794 | 10 | 131 | 95.02 | 0.72 |
Total | 704.66 | 18,161 | 223 | 4,768 | 2,480.25 | - |
Average | 24.29 | 626 | 7 | 164 | 85.52 | 0.55 |
The anchored genes and scaffolds are from the genome assembly (Chen et al., 2016).