Table 1.

Comparisons of nucleotide diversity

Categorya	Scaffolds used as referenceb	Number of samples	Number of sites retained after mapping	Number of SNPs	SNP density	Mean genetic diversity (pi)
All	All scaffolds	46	7,154,454	255,517	0.036	0.0065
Asian	All scaffolds	32	7,191,709	244,709	0.034	0.0065
European	All scaffolds	14	7,314,616	136,369	0.019	0.0055
Short-styled plant	All scaffolds	23	6,986,824	208,928	0.030	0.0065
Long-styled plant	All scaffolds	23	7,104,722	207,568	0.029	0.0064
Short-styled plant	S-allelic scaffolds	23	60,108	1123	0.019	0.0039

^aAll, containing all samples; Asian, containing samples from Asian countries; European, containing samples from European countries

^bAll scaffolds, all 387,594 scaffolds in Fes_r1.0; S-linked scaffolds, 332 of S-linked scaffolds obtained by Yasui et al. (2016) [11]