Table 4. The list of amino acid residues under positive selection in the Iodes branch.
| Gene | Positive selected position | Amino acid | Omega value |
|---|---|---|---|
| ccsA | 50 | T | 0.587 |
| 52 | F | 0.505 | |
| 131 | A | 0.502 | |
| 242 | R | 0.647 | |
| matK | 186 | R | 0.815 |
| 434 | G | 0.771 | |
| 495 | S | 0.587 | |
| 568 | V | 0.672 | |
| 639 | R | 0.868 | |
| ndhE | 5 | Y | 0.660 |
| 34 | F | 0.669 | |
| 68 | G | 0.559 | |
| 78 | S | 0.525 | |
| ndhF | 503 | M | 0.685 |
| 512 | F | 0.642 | |
| 723 | I | 0.639 | |
| ndhK | 224 | R | 0.994 |
| psaA | 18 | H | 0.717 |
| 28 | R | 0.719 | |
| 652 | A | 0.702 | |
| 680 | P | 0.896 | |
| 771 | H | 0.946 | |
| 856 | F | 0.985 | |
| 859 | R | 0.580 | |
| 860 | D | 0.984 | |
| 861 | Y | 0.979 | |
| 862 | D | 0.569 | |
| 871 | L | 0.934 | |
| 873 | R | 0.979 | |
| 875 | L | 0.756 | |
| 877 | H | 0.993 | |
| 879 | D | 0.608 | |
| 880 | A | 0.884 | |
| 881 | I | 0.902 | |
| 928 | A | 0.943 | |
| 929 | Q | 0.904 | |
| 931 | I | 0.971 | |
| 932 | Q | 0.972 | |
| 987 | V | 0.880 | |
| 988 | H | 0.992 | |
| 989 | H | 0.989 | |
| 993 | F | 0.568 | |
| rpl23 | 33 | I | 0.629 |
| 37 | R | 0.623 | |
| rpoC1 | 102 | T | 0.657 |
| 693 | F | 0.712 | |
| rps18 | 74 | S | 0.621 |
| 95 | I | 0.698 | |
| rps7 | 12 | A | 0.714 |
| 69 | V | 0.709 | |
| ycf2 | 1,478 | S | 0.894 |
| 2,127 | V | 0.994 |
Notes.
Omega value = 1, >1, and <1, indicates neutral evolution, purifying selection, and positive selection, respectively.