Table 2. Statistics for the top 20 NMR structures of Dec.
Experimental restraints | ||
---|---|---|
Total number of NMR restraints | 1009 | |
Total number of NOE distance restraints | 767 | |
Ambiguous | 73 | |
Unambiguous | 694 | |
Long range (|i-j| > 4) | 124 | |
Medium range (|i-j|)≤4) | 93 | |
Sequential (|i-j|)=1) | 281 | |
Intra-residue NOEs | 269 | |
Total number of dihedral restraints | 174 | |
φ/ ψ | 127 | |
χ1 | 47 | |
Hydrogen bond restraints (34*2) | 68 | |
RMSD from experimental restraints* | ||
NOE distance (Å) | 0.054 ± 0.003 | |
Dihedral (°) | 0.42 ± 0.14 | |
RMSD from ideal geometry | ||
Bonds (Å) | 0.0042 ± 0.0001 | |
Angles (°) | 0.55 ± 0.02 | |
Improper angles (°) | 1.68 ± 0.12 | |
EL-J (kcal/mol) | - 316 ± 44 | |
RMSD from mean NMR structure | Backbone† | All Heavy Atoms |
Entire protein 1–134 (Å) | >9.5 | >9.5 |
Folded regions 12–86 (Å) | 1.33 ± 0.21 | 1.95 ± 0.32 |
OB-fold 18–77 (Å) | 1.08 ± 0.18 | 1.66 ± 0.25 |
OB-fold 2o structure‡ (Å) | 0.84 ± 0.15 | 1.57 ± 0.31 |
Procheck Ramachandran Plot Statistics§ | ||
Most favored (%) | 89.1 | |
Additionally allowed (%) | 10.9 | |
Generously allowed (%) | 0.0 | |
Disallowed (%) | 0.0 | |
Quality Z Scores from PSVSe | ||
Procheck (ϕ,ψ) | −2.64 | |
Molprobity Clash | −1.19 |
* Structures had no NOE violations > 0.5 Å nor dihedral violations > 5 degrees.
† Atoms: Cα, N, C, O.
‡ Calculated over residues in the OB-fold portion: 21–32 (β1), 35–40 (β2), 47–50 (β3), 52–59 (αOB), 63–68 (β4), 73–77 (β5), a total of 41 amino acids.
§ Calculated with the PSVS server (http://psvs-1_5-dev.nesg.org) using only the folded parts of Dec (residues 12–89).