Table 1.
Predicted candidate genes present in the QPm.tut-4A segment introgressed from T. militinae into line 8.1
| No. | Putative conserved protein domains | No. of exons | Length of protein sequence (aa) | CS homologous genes in the QPm.tut-4A regiona | Identity (%) | Coverage (%) | RNA expressionb |
|---|---|---|---|---|---|---|---|
| Tm1 | CC; NB-ARC | 2 | 225 | – | – | – | + |
| Tm2 | CC; LRR; NB-ARC | 2 | 753 | – | – | – | + |
| Tm3 | – | 3 | 253 | – | – | – | – |
| Tm4 | CC; LRR; NB-ARC | 7 | 894 | – | – | – | – |
| Tm5 | CC; LRR; NB-ARC | 2 | 557 | – | – | – | + |
| Tm6 | CC; LRR; NB-ARC | 2 | 1017 | – | – | – | – |
| Tm7 | 5× PGG | 2 | 963 | TraesCS4A01G450100.2 (CS13) | 97 | 99 | + |
| Tm8 | 5× PGG | 3 | 764 | TraesCS4A01G449900 (CS11) | 90 | 98 | – |
| Tm9 | 4× PGG | 2 | 849 | – | – | – | – |
| Tm10 | LRR; Malectin; Pkinase | 23 | 913 | TraesCS4A01G449700 (CS9) TraesCS4A01G450300 (CS15) | 97 98 |
84 60 |
– |
| Tm11 | Ankyrin repeats; PGG | 4 | 636 | – | – | – | – |
| Tm12 | Patatin-like phospholipase | 5 | 424 | TraesCS4A01G449600 (CS8) TraesCS4A01G450400 (CS16) | 98 97 |
100 100 |
– |
CC coiled coil, NB-ARC nucleotide-binding adaptor shared by APAF-1, certain R gene products and CED4, LRR leucine-rich repeat, PGG proline-glycine-glycine (domain named for this highly conserved sequence motif found at its start), Pkinase protein kinase
aAcronym for each gene used in the body of this manuscript and Fig. 2 is provided in the parentheses
bDetected in first leaves of DH397 and T312.30.38.16 seedlings