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. 2019 Apr 4;10:1534. doi: 10.1038/s41467-019-09462-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Combinations of fructose and glucose alleles for the improvement of tomato sugar content. Only alleles that were significantly associated both with fructose and glucose were analyzed. a, b Manhattan plot for meta-analysis of genome-wide association analysis of fructose (a) and glucose (b) content. Candidates and previously identified genes were labeled in blue and red, respectively. FUCA, alpha-L-fucosidase 1; KCS, fatty acid elongase 3-ketoacyl-CoA synthase; GTF, glucosyltransferase; GADPH, glyceraldehyde-3-phosphate dehydrogenase. c Allele distribution of fructose/glucose content at positions: chr3:1,506,106, chr5:3,403,706, chr5:63,485,334, chr9:3,477,979, and chr10:422,707 that were both significantly associated with fructose and glucose in S. lycopersicum var cerasiforme (cerasiforme), heirloom + transitional (heir_trans), heir + modern (heir_mod), and the closest wild species S. pimpinellifolium (pimpinellifolium) tomato accessions (see detailed information about groups in online methods). d Comparison of sugar content (fructose + glucose) between different tomato types in cerasiforme, heir_trans, heir_mod, and pimpinellifolium tomato accessions. e Mean (±SE) content of fructose (black) and glucose (brown) at different allele combinations in cerasiforme, heir_trans, heir_mod, and pimpinellifolium tomato accessions. Significant t-test P values are also provided. f Correlation between the number of alternative alleles and sugar content. Fructose, glucose, and the sum of fructose + glucose were colored in brown4, cyan4, and purple. g Comparison of sugar content (fructose + glucose) between all alternative and reference allele combinations at position chr3: 1,506,106, chr5: 3,403,706, chr5: 63,485,334, chr9: 3,477,979, and chr10: 422,707. Center line and limits of box were the mean and interquartile ranges. Error bars represent the maximum and minimum values. Whiskers indicate variability outside the upper and lower quartiles. Significant t-test P values are also provided. Source data of Fig. 2c–g are provided in a Source Data file

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