TABLE 2.
Types of ICEs identified in the strains
| Element | Strain(s) | Integration site | Integrase(s)a (n) | Size (nt)b | ICE TPA GenBank accession no. |
|---|---|---|---|---|---|
| ICEEaI(1) | 3375 | Siroheme synthase and HP | Tyr (1) | 63,549 | BK010586 |
| ICEEaI(1) | CSID3015183678 | Inside mutY | Tyr (1) | 62,894 | BK010587 |
| ICEEaI(1) | FDAARGOS-198 | EngB and ElaA | Tyr (1) | 62,860 | BK010588 |
| ICEEaI(1) | NUHP1 | SlyD and HP | Tyr (1) | 62,960 | BK010589 |
| ICEEaI(2) | FDAARGOS-198 | TonB receptor and HP | Tyr (3) | 69,029 | BK010590 |
| ICEEaI(3) | 37-75 | Inside Ahp | Tyr (1) | 65,419 | Not availablec |
| ICEEaI(4) | CSID3000516074 | HP and LuxR TF | Tyr (1), DDE(1) | 97,160 | BK010591 |
| ICEEaI(5) | NCTC10588 | Macrolide-efflux protein and LytR/AlgR TR | Tyr (1) | 81,809 | Not availablec |
| ICEEaI(6) | PW2806, PW2809 | Efflux protein and peptidase | Tyr (1) | 79,842 | BK010592 |
| ICEEaI(7) | NUH6 | TomB receptor and HP | Tyr (1) | 59,635 | BK010593 |
| ICEEaI(8) | NUH11 | tRNA-Asp-GTCa | Tyr (2) | 95,803 | BK010594 |
| ICEEaII(1) | 0422 | tRNA-Leu-CAA | No Int | 63,840 | BK010595 |
| ICEEaII(1) | CIP60.58 | tRNA-Leu-CAA | No Int | 63,840 | BK010596 |
| ICEEaII(2) | 502 | tRNA-Leu-CAA | IS481 (2) | 38,146 | BK010597 |
| ICEEaII(3) | 12012-2 PRCM | tRNA-Leu-CAA | No Int | >56,734 | BK010598 |
| ICEEaII(4) | AmMS250 | tRNA-Leu-CAA | No Int | >64,773 | Not availablec |
| ICEEaII(5) | CIP111046 | tRNA-Leu-CAA | No Int | 87,438 | BK010599 |
| ICEEaII(6) | F3201 | tRNA-Leu-CAA | No Int | 91,608 | BK010600 |
| ICEEaII(7) | F3543 | tRNA-Leu-CAA | No Int | 104,603 | BK010601 |
| ICEEaII(8) | FMS-007 | tRNA-Leu-CAA | DDE (1) | 73,167 | BK010602 |
| ICEEaII(9) | NCTC10588 | tRNA-Leu-CAA | Ser (2) | 67,087 | Not availablec |
| ICEEaII(10) | JM-87 | tRNA-Leu-CAA | Ser (1), IS481 (1) | 36,967 | BK010603 |
| ICEEaII(11) | NUH11 | tRNA-Leu-CAA | No Int | 94,112 | BK010604 |
| ICEEaII(12) | NUHP1 | tRNA-Ser-GGA | Tyr (1) | 71,591 | BK010605 |
| ICEEaIII(1) | R26, Ag1, Ar4-6, AR6-8 | tRNA-Ser-TGA | Tyr (4), DDE (1) | 101,692 | BK010606 |
| ICEEaIII(2) | R26, Ag1, Ar4-6, AR6-8 | tRNA-Arg-ACG | Tyr (1), DDE (1) | 77,358 | BK010607 |
| ICEEaIII(3) | As1 | tRNA-Arg-ACG | Tyr (1), Ser (1), DDE (1) | >44,888 | BK010608 |
| ICEEaIII(4) | As1 | tRNA-Ser-TGA | DDE (1) | >31,354 | BK010609 |
| ICEEaIII(5) | NUHP1 | tRNA-Glu-TTC | Tyr (4) | 60,900 | BK010610 |
| ICEEaIII(6) | NUHP1 | tRNA-Glu-TTC | Tyr (1) | 74,499 | BK010611 |
| ICEEaIII(7) | NUHP1 | tRNA-Asp-GTC | Tyr (1) | 116,331 | BK010625 |
| ICEEaIII(8) | NUHP1 | tRNA-Asp-GTC | Tyr (3) | 109,040 | BK010626 |
| ICEEaIII(9) | NUH6 | tRNA-Gln-TTG | Tyr (1) | >30,166 | BK010612 |
| ICEEaIII(10) | NUH6 | tRNA-Glu-TTC | Tyr (1) | >33,929 | BK010623 |
| ICEEaIII(11) | NUH6 | tRNA-Asp-GTC | Tyr (1) | >98,049 | BK010613 |
| ICEEaIII(12) | NUH11 | Beta-lactamased | Tyr (2)d | 84,534 | BK010614 |
| ICEEaIII(13) | 0422 | tRNA-Gln-TTG | Tyr (2), DDE (4) | 67,662 | BK010615 |
| ICEEaIII(13) | CIP60.58 | tRNA-Gln-TTG | Tyr (2), DDE (4) | 66,636 | BK010616 |
| ICEEaIII(14) | Po0527107 | tRNA-Glu-TTC | Tyr (1) | >31,721 | BK010617 |
| ICEEaIII(14) | V0378064 | tRNA-Glu-TTC | Tyr (1) | >37,189 | BK010618 |
| ICEEaIII(15) | JM-87 | tRNA-Ser-TGA | Tyr (1) | 73,828 | BK010624 |
| ICEEaIII(16) | 12012-2 PRCM | tRNA-Glu-TTC | Tyr (1) | >31,732 | BK010619 |
| ICEEaIII(17) | LDVH-AR107 | tRNA-Asp-GTC | Tyr (2) | >84,845 | BK010620 |
| ICEEaIII(18) | EM361-97 | tRNA-Arg-ACG | Tyr (1), DDE (2) | 69,393 | BK010621 |
| ICEEaIII(19) | EM361-97 | tRNA-Glu-TTC | DDE (1) | >28,887 | BK010622 |
a
Tyr, tyrosine type; Ser, serine type; DDE, DDE transposase; IS481, IS481 family of transposases; Int, integrase.
b
Size (in nucleotides [nt]) is shown. >, elements were partially assembled.
c
There are no assemblies in the NCBI database for these four strains, so we did not submit third party annotation (TPA) for these genomes to GenBank.
d
Two elements, ICEEaI(8) and ICEEaIII(12) in strain NUH11 combined and integrated between tRNA-Asp-GTC and beta-lactamase. These two elements may share the same integrase.