Table 1.
List of upregulated genes in NaCl-treated S. salsa flowers determined by RNA-seq analysis; these genes are related to ion transport and proton-motive force.
| Gene ID | Control readcount | NaCl readcount | log2FC | Regulated |
|---|---|---|---|---|
| Cation/hydrogen exchanger | ||||
| Cluster-10319.9702 (SOS1) | 0 | 1877.190742 | Inf | Up |
| Cluster-10319.8664 (CHX14) | 0 | 297.5807 | Inf | Up |
| Cluster-10319.135147 (CHX13) | 10.09135025 | 116.5782369 | 3.5301 | Up |
| Cluster-10319.51233 (CHX28) | 33.99452 | 389.5622 | 3.5185 | Up |
| Cluster-10319.95871 (NHX1) | 25.61988 | 1100.805 | 5.4252 | Up |
| Chloride channel | ||||
| Cluster-10319.165251 (ICln) | 0 | 57.07504589 | Inf | Up |
| Cluster-10319.105320 (CLC) | 0 | 40.91814273 | Inf | Up |
| Potassium transporter | ||||
| Cluster-10319.107095 (KEA3) | 0 | 21.35734921 | Inf | Up |
| Cluster-10319.125508 (KEA5) | 0 | 17.01548 | Inf | Up |
| Potassium channel | ||||
| Cluster-10319.47800 (AKT1) | 0.299214025 | 63.78367483 | 7.7359 | Up |
| H+-transporting ATPase | ||||
| Cluster-10319.76030 (AHA4) | 0 | 29.03297191 | Inf | Up |
| Cluster-10319.82266 (VHA) | 2.094498173 | 280.6502929 | 7.066 | Up |
| H+-pyrophosphatase | ||||
| Cluster-10319.102050 (AVP1) | 0 | 21.22483451 | Inf | Up |
Significantly differentially expressed genes were filtered using the thresholds of q < 0.005 and |log2(FC)| > 1. log2FC (log2 fold change) equals log2 (NaCl read count/control read count); up indicates that a gene was upregulated.