Skip to main content
. 2019 Feb 26;75(Pt 3):296–307. doi: 10.1107/S2059798319000081

Table 2. Details of SAXS data collection and analysis.

  PmScsCΔN PmScsC PmScsCΔLinker
SASBDB ID SASDEK4 SASDER4 SASDEQ4
Data-collection parameters
 Instrument SAXS/WAXS, Australian Synchrotron
 Beam geometry Point
 Wavelength (Å) 1.033
 Sample-to-detector distance (m) 3.330
q-range (Å−1) 0.008–0.363
 Temperature (K) 283
 Absolute intensity calibration Water
 Exposure time (s) 38 (38 × 1 s exposures)
 Configuration Concentration series from 96-well plate
 Protein concentration range (mg ml−1) 0.1–10.0
Sample details
 Extinction coefficient [A 280, 0.1%(w/v)] 0.643 0.528 0.558
 Partial specific volume (cm3 g−1) 0.742 0.741 0.743
 Contrast, Δρ (1010 cm−2) 2.79 2.80 2.78
 Molecular mass (from sequence) (kDa) 20.2 24.8 23.4
 Protein concentration (mg ml−1) 0.50 0.1, 0.5, 2.0, 5.0, 10.0 0.1, 0.5, 2.0, 5.0, 10.0
Structural parameters
I(0) (from Guinier) (cm−1) 0.004055 ± 0.00001
R g (from Guinier) (Å) 17.0 ± 0.1
I(0) [from p(r)] (cm−1) 0.004053 ± 0.00001
R g [from p(r)] (Å) 17.0 ± 0.1
D max (Å) 55 ± 2
 Porod volume (Å3) 22200 ± 1000
Molecular-mass determination      
 Molecular mass [from I(0)] (kDa) 11 ± 2
 Molecular mass (from Porod) (kDa) 19 ± 1

PmScsCΔN: I(0) = 0.00140 ± 0.00002 cm−1, R g = 16.9 ± 0.3 Å, M = 19.8 kDa (0.1 mg ml−1); I(0) = 0.004053 ± 0.000001 cm−1, R g = 17.0 ± 0.1 Å, M = 19.1 kDa (0.5 mg ml−1); I(0) = 0.01839 ± 0.00003 cm−1, R g = 17.1 ± 0.1 Å, M = 19.3 kDa (2.0 mg ml−1); I(0) = 0.05463 ± 0.00005 cm−1, R g = 17.2 ± 0.1 Å, M = 19.6 kDa (5.0 mg ml−1); I(0) = 0.10756 ± 0.00005 cm−1, R g = 17.0 ± 0.1 Å, M = 19.2 kDa (10.0 mg ml−1). Masses from the Porod volume are used as concentration estimates, yielding masses from I(0) inconsistent with the expected mass. The 0.5 mg ml−1 data were used for subsequent data analysis.